Bug 611988

Summary:	dev-haskell/shuffle-0.1.3.3 : file collision with sci-biology/hmmer-2.3.2-r4
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo's Haskell Language team <haskell>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-biology
Priority:	Normal	Keywords:	PMASKED
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt dev-haskell:shuffle-0.1.3.3:20170307-184653.log emerge-history.txt etc.portage.tbz2

Description Toralf Förster gentoo-dev

2017-03-07 18:52:27 UTC

 * Detected file collision(s):
 * 
 * 	/usr/bin/shuffle
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sci-biology/hmmer-2.3.2-r4:2::gentoo
 * 	/usr/bin/shuffle
 * 
 * Package 'dev-haskell/shuffle-0.1.3.3' NOT merged due to file

  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named gnome-systemd_20170301-222559) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *
llvm-config:
3.9.1
Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby21 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
1)	IcedTea JDK 7.2.6.8 [icedtea-bin-7]
*)	IcedTea JDK 3.3.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-7 
  [2]   icedtea-bin-8  system-vm

Comment 1 Toralf Förster gentoo-dev

2017-03-07 18:52:33 UTC

Created attachment 466268 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2017-03-07 18:52:41 UTC

Created attachment 466270 [details]
dev-haskell:shuffle-0.1.3.3:20170307-184653.log

Comment 3 Toralf Förster gentoo-dev

2017-03-07 18:52:48 UTC

Created attachment 466272 [details]
emerge-history.txt

Comment 4 Toralf Förster gentoo-dev

2017-03-07 18:52:53 UTC

Created attachment 466274 [details]
etc.portage.tbz2

Comment 5 Larry the Git Cow gentoo-dev

2020-11-15 16:42:02 UTC

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9bc27d13997e2f94fbae7e4d13208915719bcbc

commit b9bc27d13997e2f94fbae7e4d13208915719bcbc
Author:     Sergei Trofimovich <slyfox@gentoo.org>
AuthorDate: 2020-11-15 16:41:12 +0000
Commit:     Sergei Trofimovich <slyfox@gentoo.org>
CommitDate: 2020-11-15 16:41:57 +0000

    profiles/package.mask: mask dev-haskell/shuffle (and revdeps) for removal
    
    Bug: https://bugs.gentoo.org/754675
    Bug: https://bugs.gentoo.org/611988
    Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

 profiles/package.mask | 7 +++++++
 1 file changed, 7 insertions(+)

Comment 6 Larry the Git Cow gentoo-dev

2020-12-07 19:42:02 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bde3f784864d4b4892c061a0b18354bf9b35c905

commit bde3f784864d4b4892c061a0b18354bf9b35c905
Author:     Sergei Trofimovich <slyfox@gentoo.org>
AuthorDate: 2020-12-07 19:40:05 +0000
Commit:     Sergei Trofimovich <slyfox@gentoo.org>
CommitDate: 2020-12-07 19:40:05 +0000

    dev-haskell/shuffle: remove masked package and revdeps
    
    Closes: https://bugs.gentoo.org/754675
    Closes: https://bugs.gentoo.org/611988
    Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

 dev-haskell/shuffle/Manifest                   |  1 -
 dev-haskell/shuffle/metadata.xml               | 14 ----------
 dev-haskell/shuffle/shuffle-0.1.3.3.ebuild     | 37 --------------------------
 dev-haskell/uhc-light/Manifest                 |  1 -
 dev-haskell/uhc-light/metadata.xml             | 14 ----------
 dev-haskell/uhc-light/uhc-light-1.1.9.5.ebuild | 35 ------------------------
 dev-haskell/uhc-util/Manifest                  |  1 -
 dev-haskell/uhc-util/metadata.xml              | 11 --------
 dev-haskell/uhc-util/uhc-util-0.1.6.7.ebuild   | 32 ----------------------
 profiles/package.mask                          |  7 -----
 10 files changed, 153 deletions(-)