Bug 601780 – dev-python/pynacl-1.0.1 : make[3]: *** [Makefile:2113: crypto_auth/libsodium_la-crypto_auth.lo] Error 132

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Toralf Förster 2016-12-06 08:05:59 UTC]

  CC       crypto_auth/libsodium_la-crypto_auth.lo
/bin/sh: line 1: 18279 Illegal instruction     /bin/sh ../../libtool --silent --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"libsodium\" -DPACKAGE_TARNAME=\"libsodium\" -DPACKAGE_VERSION=\"1.0.8\" -DPACKAGE_STRING=\"libsodium\ 1.0.8\" -DPACKAGE_BUGREPORT=\"https://github.com/jedisct1/libsodium/issues\" -DPACKAGE_URL=\"https://github.com/jedisct1/libsodium\" -DPACKAGE=\"libsodium\" -DVERSION=\"1.0.8\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__EXTENSIONS__=1 -D_ALL_SOURCE=1 -D_GNU_SOURCE=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D_TANDEM_SOURCE=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_MMINTRIN_H=1 -DHAVE_EMMINTRIN_H=1 -DHAVE_PMMINTRIN_H=1 -DHAVE_TMMINTRIN_H=1 -DHAVE_SMMINTRIN_H=1 -DHAVE_AVXINTRIN_H=1 -DHAVE_WMMINTRIN_H=1 -DHAVE_SYS_MMAN_H=1 -DNATIVE_LITTLE_ENDIAN=1 -DHAVE_AMD64_ASM=1 -DHAVE_AVX_ASM=1 -DHAVE_TI_MODE=1 -DHAVE_CPUID=1 -DHAVE_WEAK_SYMBOLS=1 -DCPU_UNALIGNED_ACCESS=1 -DHAVE_MMAP=1 -DHAVE_MLOCK=1 -DHAVE_MADVISE=1 -DHAVE_MPROTECT=1 -DHAVE_POSIX_MEMALIGN=1 -DHAVE_GETPID=1 -I. -I/var/tmp/portage/dev-python/pynacl-1.0.1/work/PyNaCl-1.0.1/src/libsodium/src/libsodium -I/var/tmp/portage/dev-python/pynacl-1.0.1/work/PyNaCl-1.0.1/src/libsodium/src/libsodium/include/sodium -I./include/sodium -march=native -O2 -pipe -fvisibility=hidden -fPIC -fPIE -fno-strict-aliasing -fno-strict-overflow -fstack-protector -Winit-self -Wwrite-strings -Wdiv-by-zero -c -o crypto_auth/libsodium_la-crypto_auth.lo `test -f 'crypto_auth/crypto_auth.c' || echo '/var/tmp/portage/dev-python/pynacl-1.0.1/work/PyNaCl-1.0.1/src/libsodium/src/libsodium/'`crypto_auth/crypto_auth.c
make[3]: *** [Makefile:2113: crypto_auth/libsodium_la-crypto_auth.lo] Error 132
make[3]: Leaving directory '/var/tmp/portage/dev-python/pynacl-1.0.1/work/PyNaCl-1.0.1-python2_7/temp.linux-x86_64-2.7/src/libsodium'


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-13.0-no-multilib-unstable_20161202-194045) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags in make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist ssp -cddb cgi -clang -fitz -fluidsynth ftp -minimal mpeg mpg123 -odbc -osc qml -rdoc -rendering -secure-delete smpeg system-harfbuzz -tracepath vdpau -vlc -ziffy"
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *
llvm-config --version:
3.9.0

Available Python interpreters, in order of preference:
  [1]   python2.7
  [2]   python3.4
  [3]   pypy3 (fallback)
  [4]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby20 (with Rubygems) *
  [2]   ruby21 (with Rubygems)
java-config:
The following VMs are available for generation-2:
  -----------------------------------------------------------------

Portage 2.3.3 (python 2.7.12-final-0, default/linux/amd64/13.0/no-multilib, gcc-5.4.0, glibc-2.23-r3, 4.8.11-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.8.11-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3
KiB Mem:    65285560 total,   6553392 free
KiB Swap:   67108860 total,  67089928 free
Timestamp of repository gentoo: Tue, 06 Dec 2016 01:03:32 +0000
sh bash 4.4_p5-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.4_p5-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.1_rc4::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.7.1::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.22.4::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo, 2.27::gentoo
sys-devel/gcc:            5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.8::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r3::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

tinderbox
    location: /tmp/tb/data/portage
    masters: gentoo
    priority: 2

local
    location: /usr/local/portage
    masters: gentoo
    priority: 3

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cgi cli cracklib crypt cxx dri fortran ftp gdbm iconv ipv6 mmx mmxext modules mpeg mpg123 ncurses nls nptl openmp pam pax_kernel pcre qml readline seccomp session smpeg sse sse2 ssl ssp system-harfbuzz tcpd unicode vdpau xattr xtpax zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="ar ast dgo en et ku my uk uz" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Toralf Förster 2016-12-06 08:06:02 UTC]

Created attachment 455220 [details]
dev-python:pynacl-1.0.1:20161206-033311.log

[Comment 2 Toralf Förster 2016-12-06 08:06:05 UTC]

Created attachment 455222 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2016-12-06 08:06:09 UTC]

Created attachment 455224 [details]
environment

[Comment 4 Toralf Förster 2016-12-06 08:06:12 UTC]

Created attachment 455226 [details]
etc.portage.tbz2

[Comment 5 Tobias Klausmann (RETIRED) 2016-12-06 08:23:07 UTC]

This is very odd.

"Illegal instruction" aka SIGILL is triggered when a binary is trying to execute an instruction the processor does not know (e.g. SSSE instructions on CPUs that don't have that instruction set). Note that it is the _binary_ that's at fault, not the data it is handling.

In this case the binary that is running is gcc, so I am fairly sure it's not pynacl's fault (and I can't reproduce it).

So either the gcc used has a bug, or something running in parallel was spamming "pkill -ILL gcc" during a test suite or some such. It has happened before and is very hard to track down.

[Comment 6 Tobias Klausmann (RETIRED) 2021-04-07 08:58:41 UTC]

Given comment #5 and no reports of this happening in later releases, I'm closing this as obsolete.