| Summary: | dev-python/statsmodels-0.6.1 with dev-python/matplotlib-1.5.3 fails tests - ImportError: No module named Tkinter | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | eroen <erikdenstore+gbugs> |
| Component: | Current packages | Assignee: | Python Gentoo Team <python> |
| Status: | RESOLVED OBSOLETE | ||
| Severity: | normal | CC: | jstein, pacho, sci-mathematics, sci |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | build.log | ||
localhost ~ # emerge --info '=dev-python/statsmodels-0.6.1::gentoo' matplotlib
Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r4, 4.4.6-gentoo x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-4.4.6-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
KiB Mem: 4043380 total, 2673160 free
KiB Swap: 0 total, 0 free
Timestamp of repository gentoo: Mon, 05 Dec 2016 00:45:01 +0000
sh bash 4.3_p48
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash: 4.3_p48::gentoo
dev-lang/perl: 5.22.2::gentoo
dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake: 3.5.2-r1::gentoo
dev-util/pkgconfig: 0.28-r2::gentoo
sys-apps/baselayout: 2.2::gentoo
sys-apps/openrc: 0.22.4::gentoo
sys-apps/sandbox: 2.10-r1::gentoo
sys-devel/autoconf: 2.69::gentoo
sys-devel/automake: 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils: 2.25.1-r1::gentoo
sys-devel/gcc: 4.9.3::gentoo
sys-devel/gcc-config: 1.7.3::gentoo
sys-devel/libtool: 2.4.6::gentoo
sys-devel/make: 4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc: 2.22-r4::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://rsync.gentoo.org/gentoo-portage
priority: -1000
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS=""
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
=================================================================
Package Settings
=================================================================
dev-python/statsmodels-0.6.1::gentoo was built with the following:
USE="test -doc -examples" ABI_X86="64" PYTHON_TARGETS="python2_7 python3_4 -python3_5"
dev-python/matplotlib-1.5.3::gentoo was built with the following:
USE="-cairo -doc -examples -excel -fltk -gtk2 -gtk3 -latex -pyside -qt4 -qt5 -test -tk -wxwidgets" ABI_X86="64" PYTHON_TARGETS="python2_7 python3_4 -python3_5"
CFLAGS="-O2 -pipe -fno-strict-aliasing"
CXXFLAGS="-O2 -pipe -fno-strict-aliasing"
localhost ~ # emerge -pqv '=dev-python/statsmodels-0.6.1::gentoo' matplotlib
[ebuild R ] dev-python/statsmodels-0.6.1 USE="{test} -doc -examples" PYTHON_TARGETS="python2_7 python3_4 -python3_5"
[ebuild R ] dev-python/matplotlib-1.5.3 USE="-cairo -doc -examples -excel -fltk -gtk2 -gtk3 -latex -pyside -qt4 -qt5 {-test} -tk -wxwidgets" PYTHON_TARGETS="python2_7 python3_4 -python3_5"
* IMPORTANT: 12 news items need reading for repository 'gentoo'.
* Use eselect news read to view new items.
Do they pass with newer matplotlib-2.1.0? And with newer statsmodels-0.8? The tests probably need the tk USE flag to be enabled. File a new bug if problem persists. |
Created attachment 455172 [details] build.log Tests pass with dev-python/matplotlib-1.4.3 ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_fevd_plot ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 217, in test_fevd_plot self.fevd.plot() File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/var_model.py", line 1591, in plot import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 403, in test_plot self.res.plot() File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/var_model.py", line 853, in plot plotting.plot_mts(self.y, names=self.names, index=self.dates) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 31, in plot_mts import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot_acorr ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 410, in test_plot_acorr self.res.plot_acorr() File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/var_model.py", line 657, in plot_acorr plotting.plot_full_acorr(self.acorr(nlags=nlags), linewidth=linewidth) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 120, in plot_full_acorr import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot_cum_effects ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 198, in test_plot_cum_effects self.irf.plot_cum_effects() File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/irf.py", line 221, in plot_cum_effects plot_params=plot_params, stderr_type=stderr_type) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 186, in irf_grid_plot import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot_forecast ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 417, in test_plot_forecast self.res.plot_forecast(5) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/var_model.py", line 1021, in plot_forecast plot_stderr=plot_stderr) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 52, in plot_var_forc import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot_irf ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 183, in test_plot_irf self.irf.plot() File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/irf.py", line 162, in plot plot_params=plot_params, stderr_type=stderr_type) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 186, in irf_grid_plot import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ====================================================================== ERROR: statsmodels.tsa.vector_ar.tests.test_var.TestVARResults.test_plot_sim ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/tests/test_var.py", line 396, in test_plot_sim self.res.plotsim(steps=100) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/var_model.py", line 572, in plotsim plotting.plot_mts(Y) File "/var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/tsa/vector_ar/plotting.py", line 31, in plot_mts import matplotlib.pyplot as plt File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 114, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/usr/lib64/python2.7/site-packages/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 6, in <module> from matplotlib.externals.six.moves import tkinter as Tk File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 199, in load_module mod = mod._resolve() File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 113, in _resolve return _import_module(self.mod) File "/usr/lib64/python2.7/site-packages/matplotlib/externals/six.py", line 80, in _import_module __import__(name) ImportError: No module named Tkinter ---------------------------------------------------------------------- Ran 3318 tests in 423.992s FAILED (SKIP=113, errors=7) * ERROR: dev-python/statsmodels-0.6.1::gentoo failed (test phase): * Failed to run 'nosetests --verbosity=3' * * Call stack: * ebuild.sh, line 115: Called src_test * environment, line 3727: Called distutils-r1_src_test * environment, line 1022: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 354: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 3229: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2324: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2322: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 630: Called distutils-r1_run_phase 'python_test' * environment, line 954: Called python_test * environment, line 3606: Called virtualmake '--verbosity=3' * environment, line 4351: Called virtx 'nosetests' '--verbosity=3' * environment, line 4398: Called die * The specific snippet of code: * [[ ${retval} -ne 0 ]] && die "Failed to run '$@'";