| Summary: | sci-biology/emboss-6.6.0 : configure: error: Package requirements (plplot) were not met: | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED DUPLICATE | ||
| Severity: | normal | CC: | mmokrejs |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
config.log
emerge-history.txt environment sci-biology:emboss-6.6.0:20161116-201221.log emerge-info.txt config.log emerge-history.txt environment etc.portage.tbz2 sci-biology:emboss-6.6.0:20170219-110851.log |
||
Created attachment 453570 [details]
config.log
Created attachment 453572 [details]
emerge-history.txt
Created attachment 453574 [details]
environment
Created attachment 453576 [details]
sci-biology:emboss-6.6.0:20161116-201221.log
Same here. Look plplot now installs *.pc files under different names: $ equery files plplot | grep \.pc /usr/lib64/pkgconfig/plplot-c++.pc /usr/lib64/pkgconfig/plplot-c.pc /usr/lib64/pkgconfig/plplot-f95.pc /usr/lib64/pkgconfig/plplot-tcl.pc /usr/lib64/pkgconfig/plplot-tcl_Main.pc $ Here is what the configure was looking for: $PKG_CONFIG --exists --print-errors "plplotd" $PKG_CONFIG --exists --print-errors "plplotd" $PKG_CONFIG --exists --print-errors "plplot" $PKG_CONFIG --exists --print-errors "plplot" I downgraded from pkgconfig-0.29.1 to 0.28-r3 with no change. This maybe more relevant: $ pkg-config --list-all | grep -i plplot plplot-tcl PLplot Tcl/Tk - Scientific plotting library (Double precision Tcl/Tk bindings) plplot-f95 PLplot F95 - Scientific plotting library (Double precision F95 binding) plplot-c PLplot - Scientific plotting library (Double precision Core C library) plplot-tcl_Main PLplot Tcl_Main/Tk_Main - Scientific plotting library (Double precision Tcl_Main/Tk_Main bindings) plplot-c++ PLplot C++ - Scientific plotting library (Double precision C++ binding) $ There is no 'plplot' or 'plplotd' package, IMHO. I do not know how to fix the emboss-r1 eclass but is seems one could the following hint and just set the env variables before calling econf? "Alternatively, you may set the environment variables PLPLOT_CFLAGS and PLPLOT_LIBS to avoid the need to call pkg-config." Probably duplicating the configure checks and making them look also under the current package names would be the ideal. Here is my config.log: configure:20724: checking for PLPLOT configure:20731: $PKG_CONFIG --exists --print-errors "plplotd" Package plplotd was not found in the pkg-config search path. Perhaps you should add the directory containing `plplotd.pc' to the PKG_CONFIG_PATH environment variable No package 'plplotd' found configure:20734: $? = 1 configure:20747: $PKG_CONFIG --exists --print-errors "plplotd" Package plplotd was not found in the pkg-config search path. Perhaps you should add the directory containing `plplotd.pc' to the PKG_CONFIG_PATH environment variable No package 'plplotd' found configure:20750: $? = 1 configure:20763: result: no No package 'plplotd' found configure:20781: checking for PLPLOT configure:20788: $PKG_CONFIG --exists --print-errors "plplot" Package plplot was not found in the pkg-config search path. Perhaps you should add the directory containing `plplot.pc' to the PKG_CONFIG_PATH environment variable No package 'plplot' found configure:20791: $? = 1 configure:20804: $PKG_CONFIG --exists --print-errors "plplot" Package plplot was not found in the pkg-config search path. Perhaps you should add the directory containing `plplot.pc' to the PKG_CONFIG_PATH environment variable No package 'plplot' found configure:20807: $? = 1 configure:20820: result: no No package 'plplot' found configure:20836: error: Package requirements (plplot) were not met: No package 'plplot' found $ pkg-config --list-all | grep plplot plplot-tcl PLplot Tcl/Tk - Scientific plotting library (Double precision Tcl/Tk bindings) plplot-f95 PLplot F95 - Scientific plotting library (Double precision F95 binding) plplot-c PLplot - Scientific plotting library (Double precision Core C library) plplot-tcl_Main PLplot Tcl_Main/Tk_Main - Scientific plotting library (Double precision Tcl_Main/Tk_Main bindings) plplot-c++ PLplot C++ - Scientific plotting library (Double precision C++ binding) $ $ pkg-config plplot-c --print-variables drvdir includedir libdir pcfiledir $ pkg-config plplot-c ----variable=drvdir Unknown option ----variable=drvdir $ pkg-config plplot-c --variable=drvdir /apps/gentoo/usr/lib64/plplot5.11.1/drivers $ pkg-config plplot-c --variable=includedir /apps/gentoo/usr/include/plplot $ pkg-config plplot-c --variable=libdir /apps/gentoo/usr/lib64 $ pkg-config plplot-c --variable=pcfiledir /apps/gentoo/usr/lib64/pkgconfig $ Plplot is somehow hosed, try my version bump commit 51fd4fb2277b7117039a9572f242dd39ffd322cb Author: David Seifert <soap@gentoo.org> Date: Sat Feb 18 20:09:44 2017 +0100 sci-libs/plplot: Version bump to 5.12.0 fixed, now it fails with thhe issue below ;=) Created attachment 464322 [details]
emerge-info.txt
Created attachment 464324 [details]
config.log
Created attachment 464326 [details]
emerge-history.txt
Created attachment 464328 [details]
environment
Created attachment 464330 [details]
etc.portage.tbz2
Created attachment 464332 [details]
sci-biology:emboss-6.6.0:20170219-110851.log
*** This bug has been marked as a duplicate of bug 610066 *** |
checking for PLPLOT... no checking for PLPLOT... no configure: error: Package requirements (plplot) were not met: No package 'plplot' found $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-13.0-unstable_20161114-095453) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags ... ... in make.conf: USE=" pax_kernel xtpax -cdinstall -oci8 -bindist ssp bzip2 -cdda cgroups -consolekit -corefonts cups drmkms evdev -ffmpeg git gnutls gui inifile -isag ithreads mad melt mta nscd objc odbc openexr php rdoc source system-cairo -tools webstart xcb -xetex -xkb xml" ... in /etc/portage/package.use/*: mail-mta/ssmtp mta ssl net-misc/wget ssl app-editors/xemacs -nopie dev-db/sqlite secure-delete dev-lang/python sqlite dev-qt/qtsql sqlite mail-client/thunderbird -pulseaudio system-icu media-libs/libvpx postproc media-libs/libpng apng media-sound/pulseaudio alsa media-video/ffmpeg sdl sys-libs/ntdb python sys-libs/tdb python sys-libs/tevent python x11-libs/cairo X x11-libs/libxcb xkb www-client/firefox -pulseaudio system-icu app-crypt/mit-krb5 -pkinit media-video/ffmpeg -sdl sys-libs/zlib minizip x11-base/xorg-server glamor -minimal app-crypt/pinentry -qt4 app-editors/emacs -dbus -gtk -gtk3 -ssl -svg app-text/docbook-xsl-stylesheets -ruby app-text/xmlto -latex dev-libs/boehm-gc threads dev-libs/libpcre pcre16 dev-lang/python threads dev-qt/qtgui egl eglfs dev-util/cmake -qt4 -qt5 dev-vcs/git -gtk -perl gnome-base/librsvg -tools media-libs/mesa -vaapi -video_cards_radeonsi -video_cards_radeon net-nds/openldap -sasl sys-apps/kmod tools sys-libs/ncurses -gpm x11-libs/gtk+ -cups sys-auth/polkit -kde app-text/xmlto -text net-misc/openssh ssl sys-apps/busybox -pam net-misc/iputils -caps -filecaps media-video/qgifer opencv3 media-libs/opencv ffmpeg entries in /etc/portage/package.unmask/*: ~sys-apps/sandbox-2.11 ~dev-libs/botan-1.11.32 ~sys-devel/flex-2.6.2 media-video/ffmpeg ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-5.4.0 * llvm-config --version: 3.9.0 Available Python interpreters, in order of preference: [1] python2.7 [2] python3.4 [3] python3.5 (fallback) Available Ruby profiles: [1] ruby20 (with Rubygems) * [2] ruby21 (with Rubygems) java-config: ----------------------------------------------------------------- Portage 2.3.2 (python 2.7.12-final-0, default/linux/amd64/13.0, gcc-5.4.0, glibc-2.23-r3, 4.8.8-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.8.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285560 total, 35299748 free KiB Swap: 67108860 total, 67108860 free Timestamp of repository gentoo: Wed, 16 Nov 2016 19:15:06 +0000 sh bash 4.4_p5 ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1 app-shells/bash: 4.4_p5::gentoo dev-lang/perl: 5.24.0-r2::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo dev-util/cmake: 3.7.0::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.22.3-r1::gentoo sys-apps/sandbox: 2.11-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.26.1::gentoo, 2.27::gentoo sys-devel/gcc: 5.4.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.8::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r3::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 tinderbox location: /tmp/tb/data/portage masters: gentoo priority: 2 local location: /usr/local/portage masters: gentoo priority: 3 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/omega.conf /etc/stunnel/stunnel.conf /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bzip2 cgroups cli cracklib crypt cups cxx dri drmkms evdev fortran gdbm git gnutls gui iconv inifile ipv6 ithreads mad melt mmx mmxext modules mta multilib ncurses nls nptl nscd objc odbc openexr openmp pam pax_kernel pcre php rdoc readline seccomp session source sse sse2 ssl ssp system-cairo tcpd unicode webstart xattr xcb xml xtpax zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="az bn-IN brx mni nn si son sv zh" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON