Bug 597142 – dev-python/pytables-3.3.0 compile error hdf5-blosc/src/blosc_filter.c:172:19: error: ‘BLOSC_BITSHUFFLE’ undeclared

• Product: Gentoo Linux
• Status: RESOLVED UPSTREAM

[Description Jeff Kowalczyk 2016-10-14 23:26:38 UTC]

Attempted version bump pytables-3.3.0 (attached), verbatim copy of portage latest pytables-3.2.2, with one minor diff to not rm dir (hdf5) no longer present in pytables release tarball as of 3.3.0:

--- /usr/portage/dev-python/pytables/pytables-3.2.2.ebuild      2016-10-12 13:01:36.063005705 -0700
+++ /home/jtk/jfkw-portage-overlay/dev-python/pytables/pytables-3.3.0.ebuild    2016-10-14 15:45:23.839346120 -0700
@@ -46,7 +46,7 @@
                -e "s:/usr:${EPREFIX}/usr:g" \
                -e 's:"c-blosc/hdf5/blosc_filter.c"::g' \
                -i setup.py || die
-       rm -r c-blosc/{blosc,hdf5,internal-complibs} || die
+       rm -r c-blosc/{blosc,internal-complibs} || die
        distutils-r1_python_prepare_all
 }

Compile error is as follows, build.log also attached:

hdf5-blosc/src/blosc_filter.c: In function ‘blosc_filter’:
hdf5-blosc/src/blosc_filter.c:172:19: error: ‘BLOSC_BITSHUFFLE’ undeclared (first use in this function)
  if (doshuffle == BLOSC_BITSHUFFLE) {
                   ^
hdf5-blosc/src/blosc_filter.c:172:19: note: each undeclared identifier is reported only once for each function it appears in
error: command 'x86_64-pc-linux-gnu-gcc' failed with exit status 1

Will report this to upstream if determined that this is not a Gentoo related issue.

[Comment 1 Jeff Kowalczyk 2016-10-14 23:27:26 UTC]

Created attachment 450232 [details]
emerge --info

[Comment 2 Jeff Kowalczyk 2016-10-14 23:28:03 UTC]

Created attachment 450234 [details]
pytables-3.3.0.ebuild

[Comment 3 Jeff Kowalczyk 2016-10-14 23:29:07 UTC]

Created attachment 450236 [details]
build.log

[Comment 4 Patrice Clement 2016-10-15 12:52:31 UTC]

Hi. Thanks for the bug report. Figure out with upstream what's the issue and then reopen this bug if it is indeed a Gentoo-related problem.