| Summary: | sci-chemistry/molequeue-0.8.0 : CMake Error at cmake/GenerateExportHeader.cmake:176 (if): | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | govanify, kredba |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
CMakeOutput.log
emerge-history.txt environment sci-chemistry:molequeue-0.8.0:20161012-162208.log Fix the cmake error |
||
Created attachment 450032 [details]
CMakeOutput.log
Created attachment 450034 [details]
emerge-history.txt
Created attachment 450036 [details]
environment
Created attachment 450038 [details]
sci-chemistry:molequeue-0.8.0:20161012-162208.log
Created attachment 486760 [details, diff]
Fix the cmake error
This fix the cmake error in the latest molequeue (0.8.0)
An upstream of the said fix would be very much appreciated
Or the list of compilers detected/supported can be extended to 6 and 7 too so the line string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]" becomes string(REGEX MATCH "[34567]\\.[0-9]\\.[0-9]" what worked for me. I am suggesting to add Blocks: gcc-6 and gcc-7, I do not have permission to do it myself. This has been fixed upstream, there just haven't been any releases so far. The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cab5def7fea825489200c52af153c8ec02b79e4f commit cab5def7fea825489200c52af153c8ec02b79e4f Author: Andreas Sturmlechner <asturm@gentoo.org> AuthorDate: 2018-01-13 20:39:32 +0000 Commit: Andreas Sturmlechner <asturm@gentoo.org> CommitDate: 2018-01-13 23:28:34 +0000 sci-chemistry/molequeue: Fix cmake error Closes: https://bugs.gentoo.org/596972 Package-Manager: Portage-2.3.19, Repoman-2.3.6 .../molequeue/files/molequeue-0.8.0-cmake.patch | 106 +++++++++++++++++++++ sci-chemistry/molequeue/molequeue-0.8.0.ebuild | 5 + 2 files changed, 111 insertions(+) |
-- Found Git: /usr/bin/git (found version "2.10.1") -- Could not use git to determine source version, using version 0.8.0 CMake Error at cmake/GenerateExportHeader.cmake:176 (if): if given arguments: "x86_64-pc-linux-gnu-gcc (Gentoo Hardened 6.2.0-r1 p1.1) 6.2.0 $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-hardened-no-multilib-unstable_20161006-172043) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags ... ... in make.conf: USE=" pax_kernel xtpax -cdinstall -oci8 -bindist ssp alisp cdda compat consolekit curl dec_av2 drmkms emacs extra extraengine git -gles -gnomecanvas gtk2 gtk3 -help imlib -ipv6 -javascript jpeg libinput lvm mdnsresponder-compat mp3 ncurses objc -offensive ogg opencv openexr -openmpi pam policykit printsupport pulseaudio pwquality qt5 rdoc sasl scripts -smpeg source sqlite -system-cairo tcpd -tracepath udisks -uml usb vaapi vdpau vpx webgl xa xinerama xmp xscreensaver xslt ziffy zlib" ... in /etc/portage/package.use/*: mail-mta/ssmtp mta ssl net-misc/wget ssl app-crypt/pinentry -gtk -qt4 app-editors/emacs -dbus -gtk -gtk3 -ssl -svg app-text/xmlto -latex dev-libs/boehm-gc threads dev-libs/libpcre pcre16 dev-lang/python threads dev-qt/qtgui egl eglfs dev-util/cmake -qt4 -qt5 dev-vcs/git -gtk -perl gnome-base/librsvg -tools media-libs/mesa -vaapi net-nds/openldap -sasl sys-apps/kmod tools sys-libs/ncurses -gpm x11-libs/gtk+ -cups net-misc/iputils -caps -filecaps >=dev-libs/glib-2.48.2 dbus >=media-libs/imlib2-1.4.9 X >=x11-libs/libxcb-1.12-r2 xkb >=x11-libs/libxkbcommon-0.6.1 X entries in /etc/portage/package.unmask/*: ~sys-apps/sandbox-2.11 sys-devel/gcc:6.2.0 ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-4.9.3-hardenednopie [3] x86_64-pc-linux-gnu-4.9.3-hardenednopiessp [4] x86_64-pc-linux-gnu-4.9.3-hardenednossp [5] x86_64-pc-linux-gnu-4.9.3-vanilla [6] x86_64-pc-linux-gnu-6.2.0 * llvm-config --version: 3.8.1 Available Python interpreters, in order of preference: [1] python3.4 [2] python3.5 (fallback) [3] python2.7 (fallback) ----------------------------------------------------------------- Portage 2.3.2 (python 3.4.5-final-0, hardened/linux/amd64/no-multilib, gcc-6.2.0, glibc-2.23-r2, 4.7.7-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.7.7-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285480 total, 2683312 free KiB Swap: 67108860 total, 67108860 free Timestamp of repository gentoo: Wed, 12 Oct 2016 13:01:01 +0000 sh bash 4.4 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.4::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo dev-util/cmake: 3.6.2::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.22.2::gentoo sys-apps/sandbox: 2.11-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo, 2.26.1::gentoo sys-devel/gcc: 4.9.3::gentoo, 6.2.0-r1::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /etc/stunnel/stunnel.conf /usr/lib64/fax /usr/share/config /usr/share/gnupg/qualified.txt /var/rancid/.cloginrc /var/spool/fax/etc /var/yp/Makefile" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl alisp amd64 berkdb bzip2 cdda cli compat consolekit cracklib crypt curl cxx dec_av2 dri drmkms emacs extra extraengine gdbm git gtk2 gtk3 hardened iconv imlib jpeg justify libinput lvm mdnsresponder-compat mmx mmxext modules mp3 ncurses nls nptl objc ogg opencv openexr openmp pam pax_kernel pcre pie policykit printsupport pulseaudio pwquality qt5 rdoc readline sasl scripts seccomp session source sqlite sse sse2 ssl ssp tcpd udisks unicode urandom usb vaapi vdpau vpx webgl xa xattr xinerama xmp xscreensaver xslt xtpax ziffy zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="ca-valencia my" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON