| Summary: | sci-biology/lagan-2.0-r2 : rightinfluence.cpp:21:2: error: reference to ‘end’ is ambiguous | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 582084 | ||
| Attachments: |
emerge-history.txt
environment sci-biology:lagan-2.0-r2:20160917-185915.log |
||
Created attachment 446264 [details]
emerge-history.txt
Created attachment 446266 [details]
environment
Created attachment 446268 [details]
sci-biology:lagan-2.0-r2:20160917-185915.log
package compiles fine for me on AMD64 with GCC-5.4.0.
Your first comment says you're using GCC-6.2.0, so please remove blocker to gcc-5 and set blocker to gcc-6
Portage 2.2.28 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-5.4.0, glibc-2.22-r4, 4.6.5-gentoo x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-4.6.5-gentoo-x86_64-AMD_A6-4400M_APU_with_Radeon-tm-_HD_Graphics-with-gentoo-2.2
KiB Mem: 15809020 total, 10528620 free
KiB Swap: 3583996 total, 3583996 free
Timestamp of repository gentoo: Sat, 17 Sep 2016 16:45:01 +0000
sh dash 0.5.8.2
ld GNU gold (Gentoo 2.25.1 p1.1 2.25.1) 1.11
ccache version 3.2.4 [disabled]
app-shells/bash: 4.3_p42-r1::gentoo
dev-java/java-config: 2.2.0-r3::gentoo
dev-lang/perl: 5.22.2::gentoo
dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/ccache: 3.2.4::gentoo
dev-util/cmake: 3.5.2-r1::gentoo
dev-util/pkgconfig: 0.28-r2::gentoo
sys-apps/baselayout: 2.2::gentoo
sys-apps/openrc: 0.21.7::gentoo
sys-apps/sandbox: 2.10-r1::gentoo
sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo
sys-devel/automake: 1.11.6-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils: 2.25.1-r1::gentoo
sys-devel/gcc: 5.3.0::gentoo, 5.4.0::gentoo
sys-devel/gcc-config: 1.7.3::gentoo
sys-devel/libtool: 2.4.6::gentoo
sys-devel/make: 4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc: 2.22-r4::gentoo
Repositories:
gentoo
location: /usr/portage
sync-type: rsync
sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
priority: -1000
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs cgroup collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="de_DE.utf8"
LDFLAGS="-Wl,-O1 -Wl,--icf=all -Wl,--as-needed -Wl,--hash-style=gnu -march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
MAKEOPTS="-j2 V=1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 branding gpl hdaps ipv6 nls nptl openmp pic seccomp ssl threads truetype unicode vim-syntax xattr xcb" ABI_X86="64" CPU_FLAGS_X86="aes avx fma3 fma4 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3 xop" ELIBC="glibc" INPUT_DEVICES="evdev" KERNEL="linux" L10N="de de_DE en en_GB en_US" LIBREOFFICE_EXTENSIONS="presenter-console pdfimport presenter-minimizer" LINGUAS="de de_DE en en_GB en_US" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20" USERLAND="GNU" VIDEO_CARDS="radeon r600" XFCE_PLUGINS="trash clock battery power"
Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
=================================================================
Package Settings
=================================================================
sci-biology/lagan-2.0-r2::gentoo was built with the following:
USE="" ABI_X86="64"
commit 9f39270bff954737259cc2b52e97e0bde41f7d2b Author: David Seifert <soap@gentoo.org> Date: Sun Sep 18 13:25:38 2016 +0200 sci-biology/lagan: Allow for compiling with GCC 6 Gentoo-bug: 594148 * EAPI=6 * Also fix QA violations due to implicit declarations and incorrectly formatted fprintf calls. |
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I./ -c rightinfluence.cpp rightinfluence.cpp: In function ‘void initRI(RI*, long long int)’: rightinfluence.cpp:21:2: error: reference to ‘end’ is ambiguous end.score = -2; ^~~ rightinfluence.cpp:3:18: note: candidates are: Fragment end $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-13.0-unstable_20160915-200939) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags ... ... in make.conf: USE=" pax_kernel xtpax -cdinstall -oci8 -bindist btrfs clang compat consolekit custom-cflags egl -eglfs evdev ext4 extra fontconfig git gles gnome-keyring gnuplot gnutls gstreamer inifile ithreads kerberos kvm lapack -latex ldap libinput libvirtd logrotate lvm mdnsresponder-compat -melt midi modplug mpg123 mta mysqli ncurses -offensive opus pam plotutils png python qml qt3support -qt5 rdoc sourceview ssh system-ffmpeg -thinkpad timidity tools udisks uml usbredir v4l v4l2 vala -vdpau video wma wxwidgets X -xcb xinetd xmp xvfb -ziffy" ... in /etc/portage/package.use/*: mail-mta/ssmtp ssl mta net-misc/wget ssl app-crypt/pinentry -qt4 app-editors/emacs -dbus -svg -ssl -gtk -gtk3 app-text/xmlto -latex dev-libs/boehm-gc threads dev-libs/libpcre pcre16 dev-qt/qtgui egl eglfs net-nds/openldap -sasl dev-util/cmake -qt4 -qt5 dev-vcs/git -perl gnome-base/librsvg -tools media-libs/mesa -vaapi sys-apps/kmod tools <=net-misc/openssh-7.3_p1-r2 -hpn net-misc/iputils -caps -filecaps >=app-crypt/gcr-3.20.0 gtk >=dev-libs/glib-2.48.2 dbus entries in /etc/portage/package.unmask/*: media-video/ffmpeg sys-devel/gcc:6.2.0 ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-6.2.0 * Available Python interpreters, in order of preference: [1] python3.4 [2] python2.7 (fallback) [3] pypy (fallback) ----------------------------------------------------------------- Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0, gcc-6.2.0, glibc-2.23-r2, 4.7.4-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.7.4-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285480 total, 39377028 free KiB Swap: 67108860 total, 67108860 free Timestamp of repository gentoo: Sat, 17 Sep 2016 15:27:44 +0000 sh bash 4.3_p46 ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1 app-shells/bash: 4.3_p46::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo dev-util/cmake: 3.6.2::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.21.7::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.26.1::gentoo sys-devel/gcc: 6.2.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/qpsmtpd/plugins" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X acl amd64 berkdb btrfs bzip2 clang cli compat consolekit cracklib crypt custom-cflags cxx dri egl evdev ext4 extra fontconfig fortran gdbm git gles gnome-keyring gnuplot gnutls gstreamer iconv inifile ipv6 ithreads kerberos kvm lapack ldap libinput libvirtd logrotate lvm mdnsresponder-compat midi mmx mmxext modplug modules mpg123 mta multilib mysqli ncurses nls nptl openmp opus pam pax_kernel pcre plotutils png python qml qt3support rdoc readline seccomp session sourceview sse sse2 ssh ssl system-ffmpeg tcpd timidity tools udisks uml unicode usbredir v4l v4l2 vala video wma wxwidgets xattr xinetd xmp xtpax xvfb zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="es-419 ga ms si ta-LK te zh-TW" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON