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Bug 589048

Summary: dev-db/lmdb-0.9.18: error: undefined reference to 'pthread...
Product: Gentoo Linux Reporter: dE <de.techno>
Component: Current packagesAssignee: Eray Aslan <eras>
Status: UNCONFIRMED ---    
Severity: normal CC: ldap-bugs
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Package list:
Runtime testing required: ---
Attachments: Failed build log for dev-db/lmdb-0.9.18

Description dE 2016-07-18 06:54:10 UTC
Attaching build log.

Please add -lpthread to linker flags.

Portage 2.3.0_rc1 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop/kde, gcc-5.4.0, glibc-2.22-r4, 4.3.5-gentoo x86_64)
System uname: Linux-4.3.5-gentoo-x86_64-Intel-R-_Core-TM-_i3-2120_CPU_@_3.30GHz-with-gentoo-2.2
KiB Mem:     8117400 total,   3481548 free
KiB Swap:   18874364 total,  18872392 free
Timestamp of repository gentoo: Sun, 17 Jul 2016 00:45:01 +0000
sh bash 4.3_p42-r1
ld GNU gold (Gentoo 2.25.1 p1.1 2.25.1) 1.11
ccache version 3.2.4 [enabled]
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/ccache:          3.2.4::gentoo
dev-util/cmake:           3.3.1-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2-r1::gentoo
sys-apps/openrc:          0.19.1::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            5.3.0::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo

    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://
    priority: -1000

    location: /var/lib/layman/wavilen
    masters: gentoo
    priority: 0

    location: /var/lib/layman/emc
    masters: gentoo
    priority: 1

CFLAGS="-march=native -fomit-frame-pointer -floop-interchange -floop-strip-mine -floop-block -fgraphite-identity -ftree-loop-distribution -O3 -pipe"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -fomit-frame-pointer -floop-interchange -floop-strip-mine -floop-block -fgraphite-identity -ftree-loop-distribution -O3 -pipe"
EMERGE_DEFAULT_OPTS="--with-bdeps=n --complete-graph --binpkg-respect-use=y --binpkg-changed-deps n --changed-deps n"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs binpkg-multi-instance candy ccache config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
USE="X a52 a53 aac aalib acc acpi adns alsa amd64 amr atm audiofile branding bzip2 cdda cdr cli consolekit cracklib css custom-cflags custom-optimization dbus dbx declarative dga dirac dri dts dv dvd dvdr emboss encode enscript exif faad ffmpeg firefox flac fortran gdu gif glamor glut gmp gsm gstreamer gzip iconv imlib ipc jemalloc jit jpeg jpeg2k kde ladspa lame libedit libnotify libsamplerate libwww lzma lzo mad matroska matrox mikmod mime minimal mmap mmx mmxext mng modules mozilla mp3 mp4 mpeg mplayer mudflap multilib musepack networkmanager nntp nocd nptl nptlonly nsplugin offensive ogg openal openexr opengl openmp optimization orc osc pam pango pdf phonon pie plasma png policykit posix ppds pppd qt5 quicktime raw readline schroedinger seccomp sharedmem shorten smp sndfile sockets socks5 speex spell sse sse2 sse3 sse4 sse4_1 sse4_2 ssse3 startup-notification strong-optimization svg symlink sysfs systemd taglib theora threads tiff toolame truetype twolame udev udisks unicode unixd upower usb vaapi vcd vhosts vorbis wavpack wayland win32codecs wmf wxwidgets x264 x265 xcb xcomposite xine xinerama xml xorg xpm xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="unixd authn_core authz_core authz_host access_compat alias auth_basic authn_file log_config mime log_config proxy proxy_http rewrite proxy_balancer lbmethod_bybusyness lbmethod_byrequests lbmethod_bytraffic lbmethod_heartbeat slotmem_shm env" APACHE2_MPMS="event" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="ssse3 sse3 sse4_1 sse4_2 mmx sse avx mmx sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver pdfimport" NGINX_MODULES_HTTP="charset access" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="x86_64" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965 i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Comment 1 dE 2016-07-18 06:55:28 UTC
Created attachment 440986 [details]
Failed build log for dev-db/lmdb-0.9.18
Comment 2 Fabian Groffen gentoo-dev 2017-01-26 15:08:08 UTC
>>> Install lmdb-0.9.18 into /tmp/portage/dev-db/lmdb-0.9.18/image/ category dev-db
make -j4 DESTDIR=/tmp/portage/dev-db/lmdb-0.9.18/image/ install 
x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -pthread -shared -Wl,-soname, -o mdb.lo midl.lo 
x86_64-pc-linux-gnu-gcc -march=native -fomit-frame-pointer -floop-interchange -floop-strip-mine -floop-block -fgraphite-identity -ftree-loop-distribution -O3 -pipe -Wl,-O1 -Wl,--as-needed mdb_stat.o liblmdb.a  -o mdb_stat
x86_64-pc-linux-gnu-gcc -march=native -fomit-frame-pointer -floop-interchange -floop-strip-mine -floop-block -fgraphite-identity -ftree-loop-distribution -O3 -pipe -Wl,-O1 -Wl,--as-needed mdb_copy.o liblmdb.a  -o mdb_copy
x86_64-pc-linux-gnu-gcc -march=native -fomit-frame-pointer -floop-interchange -floop-strip-mine -floop-block -fgraphite-identity -ftree-loop-distribution -O3 -pipe -Wl,-O1 -Wl,--as-needed mdb_dump.o liblmdb.a  -o mdb_dump
liblmdb.a(mdb.o):mdb.c:function mdb_txn_renew0: error: undefined reference to 'pthread_getspecific'

For some reason make install re-links the objects, and -pthread isn't set there.  It shouldn't re-link in the first place.