Bug 587664

Summary:	dev-lang/python-3.4.3-r5 - Failed to build these modules: _crypt _nis
Product:	Gentoo/Alt	Reporter:	Martin Mokrejš <mmokrejs>
Component:	Prefix Support	Assignee:	Gentoo Prefix <prefix>
Status:	RESOLVED OBSOLETE
Severity:	normal	CC:	mgorny, wgh
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description Martin Mokrejš 2016-07-01 08:27:00 UTC

Created attachment 439308 [details]
build.log

Hi Fabian,
  seems this is similar to bug #586690 . This is also a Gentoo:Prefix installation on a redhat with glibc-2.12 (I installed two instance, Gentoo:prefix and Gentoo:RAP, so for fun I now started the Gentoo:Prefix one).



building '_crypt' extension
x86_64-pc-linux-gnu-gcc -pthread -fPIC -Wno-unused-result -DNDEBUG -O2 -pipe -O2 -pipe -march=native -fwrapv -Werror=declaration-after-statement -I. -I/scratch/mmokrejs/gentoo/usr/include -I/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Include -I/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/x86_64-pc-linux-gnu -c /scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/_cryptmodule.c -o build/temp.linux-x86_64-3.4/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/_cryptmodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -L/scratch/mmokrejs/gentoo/lib -L/scratch/mmokrejs/gentoo/usr/lib -Wno-unused-result -DNDEBUG -O2 -pipe -O2 -pipe -march=native -fwrapv build/temp.linux-x86_64-3.4/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/_cryptmodule.o -L. -L/scratch/mmokrejs/gentoo/lib -L/scratch/mmokrejs/gentoo/usr/lib -lpython3.4 -o build/lib.linux-x86_64-3.4/_crypt.cpython-34.so
*** WARNING: renaming "_crypt" since importing it failed: build/lib.linux-x86_64-3.4/_crypt.cpython-34.so: undefined symbol: crypt


building 'nis' extension
x86_64-pc-linux-gnu-gcc -pthread -fPIC -Wno-unused-result -DNDEBUG -O2 -pipe -O2 -pipe -march=native -fwrapv -Werror=declaration-after-statement -I. -I/scratch/mmokrejs/gentoo/usr/include -I/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Include -I/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/x86_64-pc-linux-gnu -c /scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/nismodule.c -o build/temp.linux-x86_64-3.4/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/nismodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -L. -L/scratch/mmokrejs/gentoo/lib -L/scratch/mmokrejs/gentoo/usr/lib -Wno-unused-result -DNDEBUG -O2 -pipe -O2 -pipe -march=native -fwrapv build/temp.linux-x86_64-3.4/scratch/mmokrejs/gentoo/var/tmp/portage/dev-lang/python-3.4.3-r5/work/Python-3.4.3/Modules/nismodule.o -L. -L/scratch/mmokrejs/gentoo/lib -L/scratch/mmokrejs/gentoo/usr/lib -lpython3.4 -o build/lib.linux-x86_64-3.4/nis.cpython-34.so
*** WARNING: renaming "nis" since importing it failed: build/lib.linux-x86_64-3.4/nis.cpython-34.so: undefined symbol: yp_master



$ emerge -pqv '=dev-lang/python-3.4.3-r5::gentoo_prefix'
[ebuild  NS   ] dev-lang/python-3.4.3-r5 [2.7.11] USE="gdbm ipv6 ncurses readline sqlite ssl threads xml (-aqua) -build -examples -hardened -libressl -tk -wininst" 
$ emerge --info '=dev-lang/python-3.4.3-r5::gentoo_prefix'
Portage 2.2.28-prefix (python 2.7.11-final-0, prefix/linux/amd64, gcc-5.3.0, unavailable, 2.6.32-573.12.1.el6.Bull.88.x86_64 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-2.6.32-573.12.1.el6.Bull.88.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2670_0_@_2.60GHz-with-redhat-6.4-Santiago
KiB Mem:   131942764 total,  60976544 free
KiB Swap:   65536128 total,  64598236 free
Timestamp of repository gentoo_prefix: Thu, 30 Jun 2016 21:57:57 +0000
sh bash 4.3_p39
ld GNU ld (Gentoo 2.24 p1.3) 2.24
app-shells/bash:          4.3_p39::gentoo_prefix
dev-java/java-config:     2.2.0-r3::gentoo_prefix
dev-lang/perl:            5.24.0-r1::gentoo_prefix
dev-lang/python:          2.7.11::gentoo_prefix
dev-util/cmake:           3.5.2-r1::gentoo_prefix
dev-util/pkgconfig:       0.29.1::gentoo_prefix
sys-devel/autoconf:       2.69::gentoo_prefix
sys-devel/automake:       1.13.4::gentoo_prefix, 1.14.1::gentoo_prefix, 1.15::gentoo_prefix
sys-devel/binutils:       2.24-r2::gentoo_prefix
sys-devel/gcc:            4.2.4-r2::gentoo_prefix, 4.8.5::gentoo_prefix, 4.9.3::gentoo_prefix, 5.3.0::gentoo_prefix
sys-devel/gcc-config:     1.8-r1::gentoo_prefix
sys-devel/libtool:        2.4.6-r1::gentoo_prefix
sys-devel/make:           4.2.1::gentoo_prefix
sys-kernel/linux-headers: 4.6::gentoo_prefix (virtual/os-headers)
Repositories:

gentoo_prefix
    location: /scratch/mmokrejs/gentoo/usr/portage
    sync-type: webrsync
    sync-uri: webrsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    aliases: gentoo

science
    location: /scratch/mmokrejs/gentoo/var/lib/layman/science
    masters: gentoo_prefix
    priority: 0

haskell
    location: /scratch/mmokrejs/gentoo/var/lib/layman/haskell
    masters: gentoo_prefix
    priority: 1

x-layman
    location: /scratch/mmokrejs/gentoo/var/lib/layman
    masters: gentoo_prefix
    priority: 2

ACCEPT_KEYWORDS="~amd64-linux"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -O2 -pipe -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -O2 -pipe -march=native"
DISTDIR="/scratch/mmokrejs/gentoo/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs case-insensitive-fs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged userfetch userpriv usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j4"
PKGDIR="/scratch/mmokrejs/gentoo/usr/portage/packages"
PORTAGE_CONFIGROOT="/scratch/mmokrejs/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/scratch/mmokrejs/gentoo/var/tmp"
USE="amd64 berkdb bzip2 cli cracklib crypt cxx doc dri fortran gdbm iconv ipv6 man mmx mmxext modules ncurses nls nptl openmp pcre prefix prefix-guest readline seccomp session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Comment 1 Fabian Groffen gentoo-dev

2016-07-02 07:30:48 UTC

RAP Aint Prefix

I think you're using a python without Prefix patches, so there's not much I am going to do here.  Benda, perhaps we should request a RAP component, because most if not all of Martin's bugs are non-Prefix bugs.

Comment 2 Martin Mokrejš 2016-07-04 10:58:05 UTC

(In reply to Fabian Groffen from comment #1)
> RAP Aint Prefix
> 
> I think you're using a python without Prefix patches, so there's not much I

That should  NOT be the case. As I said in initial report, I tried both:

bootstrap-prefix.sh -> /scratch/mmokrejs/gentoo
bootstrap-rap.sh  -> /scratch/mmokrejs/gentoo_rap

This bug report is about python which does not compile on the "prefixed, IMHO" install in /scratch/mmokrejs/gentoo . What am I missing?

> am going to do here.  Benda, perhaps we should request a RAP component,
> because most if not all of Martin's bugs are non-Prefix bugs.

Weird, most of the issue I reported were with bootstrap-prefix.sh , I discovered much later bootstrap-rap.sh.


I am sorry if I generated too much confusion, I thought the 'emerge --info' contents describe the system quite well.

Comment 3 Benda Xu gentoo-dev

2016-07-07 03:16:30 UTC

(In reply to Fabian Groffen from comment #1)
> RAP Aint Prefix
> 
> I think you're using a python without Prefix patches, so there's not much I
> am going to do here.  

They do from gentoo_prefix repo (from emerge --info).

> Benda, perhaps we should request a RAP component,

Good idea.

> because most if not all of Martin's bugs are non-Prefix bugs.

Not true.  See above.

Comment 4 Martin Mokrejš 2016-07-11 08:55:55 UTC

I opened http://bugs.python.org/issue27480 .

Comment 5 Benda Xu gentoo-dev

2018-01-17 02:19:50 UTC

*** Bug 612184 has been marked as a duplicate of this bug. ***

Comment 6 Michał Górny archtester

2019-04-20 08:28:32 UTC

py3.4 is gone.