Bug 576774 – dev-util/geany-1.26 : RuntimeError: module compiled against API version a but this version of numpy is 9

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Toralf Förster 2016-03-08 13:43:56 UTC]

/usr/bin/rst2html.py -stg --stylesheet=./geany.css ../HACKING hacking.html
/usr/bin/rst2pdf ./geany.txt -o geany-1.26.pdf
RuntimeError: module compiled against API version a but this version of numpy is 9
<line>The first field is the tag name (usually a function name).</line> line
<line>The second field is the type of the return value.</line> line
<line>The third field is the argument list for this tag.</line> line


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-gnome-unstable_20160222-021801) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  make.conf: USE="mmx sse sse2 pax_kernel -cdinstall -oci8 -bindist avformat avx2 cdb cgoups compat cups custom-optimization designer dvd ecc eglfs fpm gif git gles2 gnomecanvas gstreamer gtk3 havege icu imap -inifile jadetex -mbox mng modplug nss obj odbc openexr pcre16 php plasma -png postscript pwquality qml scrypt sddm spice -sql ssh-askpass svg system-cairo system-llvm tls usb v4l xa xkb xml xvfb"

  -----------------------------------------------------------------
Portage 2.2.27 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-4.9.3, glibc-2.22-r2, 4.4.4-hardened x86_64)
=================================================================
System uname: Linux-4.4.4-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164680 total,   2865624 free
KiB Swap:   16777212 total,  16730200 free
Timestamp of repository gentoo: Tue, 08 Mar 2016 06:22:47 +0000
sh bash 4.3_p42-r2
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
ccache version 3.2.4 [disabled]
app-shells/bash:          4.3_p42-r2::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.22.1::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo
dev-util/ccache:          3.2.4::gentoo
dev-util/cmake:           3.4.3::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.20.5::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/rancid/.cloginrc /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--deep --verbose-conflicts --color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 avformat avx2 berkdb bluetooth branding bzip2 cairo cdb cdda cdr cgoups cli colord compat consolekit cracklib crypt cups custom-optimization cxx dbus designer dri dts dvd dvdr ecc eds eglfs emboss encode evo exif fam firefox flac fortran fpm gdbm gif git glamor gles2 gnome gnome-keyring gnome-online-accounts gnomecanvas gpm gstreamer gtk gtk3 havege iconv icu imap introspection ipv6 jadetex jpeg lcms ldap libnotify libsecret mad mmx mmxext mng modplug modules mp3 mp4 mpeg multilib nautilus ncurses nls nptl nss obj odbc ogg openexr opengl openmp pam pango pax_kernel pcre pcre16 pdf php plasma policykit postscript ppds pulseaudio pwquality qml qt3support qt4 readline scrypt sddm sdl seccomp session spell spice sse sse2 ssh-askpass ssl startup-notification svg system-cairo system-llvm tcpd tiff tls tracker truetype udev udisks unicode upower usb v4l vorbis wxwidgets x264 xa xattr xcb xkb xml xv xvfb xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Toralf Förster 2016-03-08 13:43:59 UTC]

Created attachment 427732 [details]
dev-util:geany-1.26:20160308-082843.log

[Comment 2 Toralf Förster 2016-03-08 13:44:01 UTC]

Created attachment 427734 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2016-03-08 13:44:04 UTC]

Created attachment 427736 [details]
environment

[Comment 4 Toralf Förster 2016-03-08 14:40:06 UTC]

Hhm, dev-python/rst2pdf is involved - Cc'ing python team