Bug 574708 – dev-python/pygsl-0.9.5-r1 with gsl-2.1: distutils.errors.DistutilsExecError: min gsl version (1, 9) required

• Product: Gentoo Linux
• Status: RESOLVED DUPLICATE

[Description Andrey Grozin 2016-02-14 15:47:07 UTC]

>>> Compiling source in /var/tmp/portage/dev-python/pygsl-0.9.5-r1/work/pygsl-0.9.5 ...
 * python2_7: running distutils-r1_run_phase distutils-r1_python_compile
/usr/bin/python2.7 setup.py build
No array object was selected.
Looking for a suitable array module
SELECTED a NEW array module -> numpy
Please make sure that all modules are built with the same setting.
e.g. remove the build directory and start the build process again!
numpy
Traceback (most recent call last):
  File "setup.py", line 141, in <module>
    python_min_version=(2,1),
  File "setup.py", line 87, in SWIG_Extension
    return apply(_SWIG_Extension, args, kws)
  File "gsl_dist/swig_extension.py", line 72, in __init__
    python_min_version)
  File "gsl_dist/gsl_Extension.py", line 171, in __init__
    "min gsl version %s required"%repr(gsl_min_version)
distutils.errors.DistutilsExecError: min gsl version (1, 9) required
 * ERROR: dev-python/pygsl-0.9.5-r1::gentoo failed (compile phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  133:  Called src_compile
 *   environment, line 3546:  Called distutils-r1_src_compile
 *   environment, line  861:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 *   environment, line  282:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3085:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2194:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2192:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line  544:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 *   environment, line  852:  Called distutils-r1_python_compile
 *   environment, line  724:  Called esetup.py 'build'
 *   environment, line 1352:  Called die
 * The specific snippet of code:
 *       "${@}" || die "${die_args[@]}" || return ${?}

elrond ~ # emerge --info '=dev-python/pygsl-0.9.5-r1::gentoo'
Portage 2.2.27 (python 3.4.3-final-0, default/linux/x86/13.0/desktop/kde, gcc-5.3.0, glibc-2.22-r1, 4.4.0-gentoo i686)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.4.0-gentoo-i686-Pentium-R-_Dual-Core_CPU_E5300_@_2.60GHz-with-gentoo-2.2
KiB Mem:     2061152 total,    917032 free
KiB Swap:    2088412 total,   2084744 free
Timestamp of repository gentoo: Sun, 14 Feb 2016 11:45:01 +0000
sh bash 4.3_p42-r2
ld GNU ld (Gentoo 2.25 p1.2) 2.25
app-shells/bash:          4.3_p42-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.1::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.3.5-r7::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo
dev-util/cmake:           3.4.3::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.20.4::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r3::gentoo, 1.10.3::gentoo, 1.11.6::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
    priority: -1000

lisp
    location: /var/lib/layman/lisp
    sync-type: git
    sync-uri: git://anongit.gentoo.org/proj/lisp.git
    masters: gentoo
    priority: 50

science
    location: /var/lib/layman/science
    sync-type: git
    sync-uri: git://anongit.gentoo.org/proj/sci.git
    masters: gentoo
    priority: 50

sunrise
    location: /var/lib/layman/sunrise
    sync-type: git
    sync-uri: git://anongit.gentoo.org/proj/sunrise-reviewed.git
    masters: gentoo
    priority: 50

grozin
    location: /usr/local/portage
    masters: gentoo
    priority: 60

ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms sign strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=native -pipe"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo"
LANG="ru_RU.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acpi alsa bash-completion berkdb blas bluetooth boehm-gc branding browserplugin bzip2 cairo cdda cdr consolekit cracklib crypt css cups curl cxx dbus declarative dirac doc dri dvd dvdnav dvdr emacs enca encode exif fam ffmpeg fftw firefox flac fltk fortran gd gdbm gif glamor gmp gpm gsl gtk iconv imagemagick jpeg kde kipi kpathsea lapack latex lcms ldap leim libnotify lzma mad mng modules mozilla mp3 mp4 mpeg mule ncurses nls nptl nsplugin offensive ogg opengl openmp pam pango pcre pdf phonon plasma plotutils png policykit ppds python qt3support qt4 readline schroedinger sdl seccomp semantic-desktop session speex spell ssl startup-notification svg tcl tcpd theora tiff tk truetype udev udisks umfpack unicode upower usb v4l2 vcd vorbis win32codecs wxwidgets x264 x86 xattr xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="ru" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 python3_4" RUBY_TARGETS="ruby21 ruby22" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.3"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

elrond ~ # emerge -pqv '=dev-python/pygsl-0.9.5-r1::gentoo'
[ebuild     U ] dev-python/pygsl-0.9.5-r1 [0.9.5] USE="-examples" PYTHON_TARGETS="python2_7%*"

[Comment 1 Justin Lecher (RETIRED) 2016-02-14 17:47:02 UTC]

*** This bug has been marked as a duplicate of bug 574704 ***