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Bug 573118

Summary: sci-physics/geant-4.9.4_p03 : -- Include directory "/usr/include" does not exist
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Physics related packages <sci-physics>
Status: RESOLVED FIXED    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: CMakeOutput.log
emerge-history.txt
environment
sci-physics:geant-4.9.4_p03:20160126-225721.log

Description Toralf Förster gentoo-dev 2016-01-27 13:38:32 UTC
-- Found CLHEP version: CLHEP 2.2.0.5
-- Include directory "/usr/include" does not exist
CMake Error at cmake/Modules/ResolveCompilerPaths.cmake:91 (list):
  list sub-command REMOVE_DUPLICATES requires list to be present.
Call Stack (most recent call first):
  cmake/Modules/FindCLHEP.cmake:110 (RESOLVE_INCLUDES)


$ cat ./info.txt
  -----------------------------------------------------------------

  This is an stable amd64 chroot image (named amd64-desktop-stable_20160116-231617) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  USE=mmx sse sse2 pax_kernel -cdinstall -oci8 -bindist -avformat -avx btrfs cdda cgoups consolekit custom-optimization dbus dec_av2 dvb extraengine git gnomecanvas gui imlib introspection ipv6 jadetex jpeg kerberos kvm mbox multimedia objc -offensive ogg opengl pdo php pkcs11 postproc qt4 source spice sql sse4_2 -ssh-askpass system-icu widgets x264 xinetd xkb xvfb apache alisp alsa cdda cddb cgi compat curl ffmpeg fontconfig fpm gd gstreamer graphtft gtkstyle gtk gtkstyle haptic havege icu libkms mdnsresponder-compat melt minizip mysql mysqli ois opencv opengl pdo php plasma postproc python rendering server sqlite szip tcl theora threads tk video wav webkit xa xmp xvfb

  -----------------------------------------------------------------
  Portage 2.2.26 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.21-r1, 4.3.4-hardened x86_64)
=================================================================
System uname: Linux-4.3.4-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164680 total,    824632 free
KiB Swap:   16777212 total,  16722300 free
Timestamp of repository gentoo: Tue, 26 Jan 2016 18:25:11 +0000
sh bash 4.3_p42-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/cmake:           3.3.1-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.19.1::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/grs/systems.conf /etc/stunnel/stunnel.conf /usr/lib64/fax /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/maven-bin-3.3/conf /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb /var/spool/fax/etc /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/gamedata/ /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose-conflicts --color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alisp alsa amd64 apache berkdb bluetooth branding btrfs bzip2 cairo cdda cddb cdr cgi cgoups cli compat consolekit cracklib crypt cups curl custom-optimization cxx dbus dec_av2 dri dts dvb dvd dvdr emboss encode exif extraengine fam ffmpeg firefox flac fontconfig fortran fpm gd gdbm gif git glamor gnomecanvas gpm graphtft gstreamer gtk gtkstyle gui haptic havege iconv icu imlib introspection ipv6 jadetex jpeg kerberos kvm lcms ldap libkms libnotify mad mbox mdnsresponder-compat melt minizip mmx mmxext mng modules mp3 mp4 mpeg multilib multimedia mysql mysqli ncurses nls nptl objc ogg ois opencv opengl openmp pam pango pax_kernel pcre pdf pdo php pkcs11 plasma png policykit postproc ppds python qt3support qt4 readline rendering sdl seccomp server session source spell spice sql sqlite sse sse2 sse4_2 ssl startup-notification svg system-icu szip tcl tcpd theora threads tiff tk truetype udev udisks unicode upower usb video vorbis wav webkit widgets wxwidgets x264 xa xattr xcb xinetd xkb xml xmp xv xvfb xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-01-27 13:38:35 UTC
Created attachment 423980 [details]
CMakeOutput.log
Comment 2 Toralf Förster gentoo-dev 2016-01-27 13:38:37 UTC
Created attachment 423982 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2016-01-27 13:38:39 UTC
Created attachment 423984 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2016-01-27 13:38:42 UTC
Created attachment 423986 [details]
sci-physics:geant-4.9.4_p03:20160126-225721.log
Comment 5 Larry the Git Cow gentoo-dev 2018-01-19 18:39:58 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1b8ddffa1ecb546b5b84078d7d18aa4b1e77acda

commit 1b8ddffa1ecb546b5b84078d7d18aa4b1e77acda
Author:     Andreas Sturmlechner <asturm@gentoo.org>
AuthorDate: 2018-01-12 18:25:07 +0000
Commit:     Andreas Sturmlechner <asturm@gentoo.org>
CommitDate: 2018-01-19 18:39:37 +0000

    sci-physics/geant: Drop old
    
    Closes: https://bugs.gentoo.org/573118
    Closes: https://bugs.gentoo.org/573778
    Closes: https://bugs.gentoo.org/589622
    Closes: https://bugs.gentoo.org/644358
    Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-physics/geant/Manifest                         |  8 --
 .../files/geant-4.10.0-TrackingNavigator.patch     | 60 ---------------
 .../geant/files/geant-4.10.0-no-examples.patch     | 22 ------
 .../geant/files/geant-4.10.02-std-isnan.patch      | 17 -----
 .../geant/files/geant-4.10.2-no-examples.patch     | 18 -----
 sci-physics/geant/files/geant-4.9.4-zlib.patch     | 35 ---------
 sci-physics/geant/geant-3.21.14-r4.ebuild          | 67 ----------------
 sci-physics/geant/geant-4.10.00.ebuild             | 88 ----------------------
 sci-physics/geant/geant-4.10.00_p01.ebuild         | 85 ---------------------
 sci-physics/geant/geant-4.10.01.ebuild             | 86 ---------------------
 sci-physics/geant/geant-4.10.01_p02.ebuild         | 87 ---------------------
 sci-physics/geant/geant-4.10.02.ebuild             | 87 ---------------------
 sci-physics/geant/geant-4.9.6_p02-r1.ebuild        | 85 ---------------------
 13 files changed, 745 deletions(-)