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Bug 570782

Summary: dev-db/spatialite-3.0.1 fails tests with segfaults in
Product: Gentoo Linux Reporter: eroen <gentoo>
Component: [OLD] DevelopmentAssignee: Sci-geo Project <sci-geosciences>
Status: UNCONFIRMED ---    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Package list:
Runtime testing required: ---
Attachments: build.log

Description eroen 2016-01-03 19:27:47 UTC
Created attachment 421808 [details]

make  check-TESTS
make[2]: Entering directory '/var/tmp/portage/dev-db/spatialite-3.0.1/work/libspatialite-3.0.1/test'
PASS: check_version
/bin/sh: line 5: 10845 Segmentation fault      ${dir}$tst
FAIL: check_init
/bin/sh: line 5: 10863 Segmentation fault      ${dir}$tst
FAIL: check_create
/bin/sh: line 5: 10881 Segmentation fault      ${dir}$tst
FAIL: check_dbf_load
/bin/sh: line 5: 10899 Segmentation fault      ${dir}$tst
FAIL: check_shp_load
/bin/sh: line 5: 10917 Segmentation fault      ${dir}$tst
FAIL: check_shp_load_3d
/bin/sh: line 5: 10935 Segmentation fault      ${dir}$tst
FAIL: shape_cp1252
/bin/sh: line 5: 10953 Segmentation fault      ${dir}$tst
FAIL: shape_utf8_1
/bin/sh: line 5: 10971 Segmentation fault      ${dir}$tst
FAIL: shape_utf8_2
/bin/sh: line 5: 10989 Segmentation fault      ${dir}$tst
FAIL: shape_3d
/bin/sh: line 5: 11007 Segmentation fault      ${dir}$tst
FAIL: check_xls_load
PASS: check_math_funcs
PASS: check_gaia_util
Local codeset: ANSI_X3.4-1968
PASS: check_gaia_utf8
PASS: check_extension
/bin/sh: line 5: 11089 Segmentation fault      ${dir}$tst
FAIL: check_sql_stmt
/bin/sh: line 5: 11107 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable1
/bin/sh: line 5: 11125 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable2
/bin/sh: line 5: 11143 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable3
/bin/sh: line 5: 11161 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable4
/bin/sh: line 5: 11179 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable5
/bin/sh: line 5: 11197 Segmentation fault      ${dir}$tst
FAIL: check_virtualtable6
/bin/sh: line 5: 11215 Segmentation fault      ${dir}$tst
FAIL: check_mbrcache
/bin/sh: line 5: 11233 Segmentation fault      ${dir}$tst
FAIL: check_spatialindex
19 of 24 tests failed
Please report to
Makefile:1264: recipe for target 'check-TESTS' failed
make[2]: *** [check-TESTS] Error 1
make[2]: Leaving directory '/var/tmp/portage/dev-db/spatialite-3.0.1/work/libspatialite-3.0.1/test'
Makefile:1386: recipe for target 'check-am' failed
make[1]: *** [check-am] Error 2
make[1]: Leaving directory '/var/tmp/portage/dev-db/spatialite-3.0.1/work/libspatialite-3.0.1/test'
Makefile:341: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1
 * ERROR: dev-db/spatialite-3.0.1::gentoo failed (test phase):
 *   Make check failed. See above for details.
 * Call stack:
 *  , line  90:  Called src_test
 *          environment, line 748:  Called default
 *, line 763:  Called default_src_test
 *, line 792:  Called __eapi0_src_test
 *, line 760:  Called die
 * The specific snippet of code:
 *   		$emake_cmd ${internal_opts} check || \
 *   			die "Make check failed. See above for details."

localhost ~ # dmesg -H | tail -n 12
[Jan 3 19:12] perf interrupt took too long (62851 > 62500), lowering kernel.perf_event_max_sample_rate to 2000
[Jan 3 19:13] perf interrupt took too long (125508 > 125000), lowering kernel.perf_event_max_sample_rate to 1000
[Jan 3 19:17] check_init[10845]: segfault at 600 ip 00007f0b968f5731 sp 00007ffcfaaa6f40 error 4 in[7f0b96869000+32c000]
[  +0.018477] check_create[10863]: segfault at 600 ip 00007f4ad1ec2731 sp 00007fffad471f50 error 4 in[7f4ad1e36000+32c000]
[  +0.018352] check_dbf_load[10881]: segfault at 600 ip 00007f5c7b6fd731 sp 00007ffdd841a680 error 4 in[7f5c7b671000+32c000]
[  +0.019550] check_shp_load[10899]: segfault at 600 ip 00007ff65cd75731 sp 00007ffd7b6fc850 error 4 in[7ff65cce9000+32c000]
[  +0.018750] check_shp_load_[10917]: segfault at 600 ip 00007f355750d731 sp 00007ffc2deb5e60 error 4 in[7f3557481000+32c000]
[  +0.019654] shape_cp1252[10935]: segfault at 600 ip 00007fa2fdbeb731 sp 00007ffd2a020ae0 error 4 in[7fa2fdb5f000+32c000]
[  +0.018898] shape_utf8_1[10953]: segfault at 600 ip 00007f5d99f4c731 sp 00007ffd21a28e20 error 4 in[7f5d99ec0000+32c000]
[  +0.019358] shape_utf8_2[10971]: segfault at 600 ip 00007f89425d5731 sp 00007fffe2659710 error 4 in[7f8942549000+32c000]
[  +0.019580] shape_3d[10989]: segfault at 600 ip 00007fb9da9e9731 sp 00007ffde6717af0 error 4 in[7fb9da95d000+32c000]
[  +0.018826] check_xls_load[11007]: segfault at 600 ip 00007fbef4545731 sp 00007ffcc8fbd860 error 4 in[7fbef44b9000+32c000]
Comment 1 eroen 2016-01-03 19:29:43 UTC
localhost ~ # emerge --info '=dev-db/spatialite-3.0.1::gentoo'
Portage 2.2.24 (python 3.4.3-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.21-r1, 4.1.12-gentoo x86_64)
                         System Settings
System uname: Linux-4.1.12-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
KiB Mem:     2048344 total,   1776704 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Fri, 01 Jan 2016 00:45:01 +0000
sh bash 4.3_p42
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.18.4::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r1::gentoo

    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://
    priority: -1000

CFLAGS="-O2 -pipe"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"

localhost ~ # emerge -pqv '=dev-db/spatialite-3.0.1::gentoo'
[ebuild  N    ] dev-db/spatialite-3.0.1  USE="geos iconv proj xls" 

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