Bug 568242 – dev-ros/diagnostic_updater-1.8.8 : undefined reference to `ros::console::initializeLogLocation(ros::console::LogLocation*, std::_

• Product: Gentoo Linux
• Status: RESOLVED INVALID

[Description Toralf Förster 2015-12-14 14:47:13 UTC]

/usr/bin/x86_64-pc-linux-gnu-g++  -DROSCONSOLE_BACKEND_LOG4CXX -DROS_PACKAGE_NAME=\"diagnostic_updater\" -I/var/tmp/portage/dev-ros/diagnostic_updater-1.8.8/work/diagnostics-1.8.8/diagnostic_updater/include -I//usr/include -I/usr/include/xmlrpcpp   -DNDEBUG -march=native -O2 -pipe    -o CMakeFiles/example.dir/src/example.cpp.o -c /var/tmp/portage/dev-ros/diagnostic_updater-1.8.8/work/diagnostics-1.8.8/diagnostic_updater/src/example.cpp
[100%] Linking CXX executable devel/libexec/diagnostic_updater/example
/usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++   -march=native -O2 -pipe    -Wl,-O1 -Wl,--as-needed CMakeFiles/example.dir/src/example.cpp.o  -o devel/libexec/diagnostic_updater/example -rdynamic -lroscpp -lpthread -lboost_signals-mt -lboost_filesystem-mt -lrosconsole -lrosconsole_log4cxx -lrosconsole_backend_interface -llog4cxx -lboost_regex-mt -lxmlrpcpp -lroscpp_serialization -lrostime -lboost_date_time-mt -lcpp_common -lboost_system-mt -lboost_thread-mt -lconsole_bridge 
CMakeFiles/example.dir/src/example.cpp.o: In function `diagnostic_updater::DiagnosticStatusWrapper::summaryf(unsigned char, char const*, ...)':
example.cpp:(.text._ZN18diagnostic_updater23DiagnosticStatusWrapper8summaryfEhPKcz[_ZN18diagnostic_updater23DiagnosticStatusWrapper8summaryfEhPKcz]+0x1c8): undefined reference to `ros::console::initializeLogLocation(ros::console::LogLocation*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, ros::console::levels::Level)'
CMakeFiles/example.dir/src/example.cpp.o: In function `diagnostic_updater::Updater::setHardwareIDf(char const*, ...)':


$ cat ./info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-13.0-unstable_20151211-113822) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  Portage 2.2.26 (python 3.4.3-final-0, default/linux/amd64/13.0, gcc-5.3.0, glibc-2.22-r1, 4.2.7-hardened x86_64)
=================================================================
System uname: Linux-4.2.7-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164724 total,   1248488 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Mon, 14 Dec 2015 05:22:04 +0000
sh bash 4.3_p42
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.3_p42::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.11::gentoo, 3.3.5-r5::gentoo, 3.4.3-r5::gentoo, 3.5.0-r4::gentoo
dev-util/cmake:           3.4.1::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.19.1::gentoo
sys-apps/sandbox:         2.9::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.3.0::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--deep --color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="acl aes-ni alsa amd64 berkdb bzip2 cairo cdb cgi cli cracklib crypt custom-cflags cxx dnssec dri drmkms ecc egl fontconfig fortran ftp gd gdbm help hpn iconv ipv6 jadetex javascript kvm ldap libkms mmx mmxext mod modules mssql multilib multimedia mysql ncurses nls nptl nscd obj offensive opencv openmp pam pax_kernel pcre pkcs11 pulseaudio pwquality qt3support readline sddm seccomp session smartcard sockets spice sse sse2 sse4_2 ssl svg system-jpeg tcpd theora unicode video wxwidgets xattr xmlreader xscreensaver zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Toralf Förster 2015-12-14 14:47:16 UTC]

Created attachment 419170 [details]
dev-ros:diagnostic_updater-1.8.8:20151214-092104.log

[Comment 2 Toralf Förster 2015-12-14 14:47:18 UTC]

Created attachment 419172 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2015-12-14 14:47:20 UTC]

Created attachment 419174 [details]
environment

[Comment 4 Alexis Ballier 2015-12-14 14:59:45 UTC]

I think you haven't followed gcc 5 upgrade guide:

Title: GCC 5 Defaults to the New C++11 ABI 
Author: Mike Frysinger <[e-mail]>
Content-Type: text/plain
Posted: 2015-10-02
Revision: 1
News-Item-Format: 1.0
Display-If-Installed: >=sys-devel/gcc-5

GCC 5 uses the new C++ ABI by default.  When building new code, you might run
into link time errors like:
...: undefined reference to '_ZNSt6chrono12steady_clock3nowEv@GLIBCXX_3.4.17'
Or you might see linkage failures with "std::__cxx11::string" in the output.

These are signs that you need to rebuild packages using the new C++ ABI.
You can quickly do so by using revdep-rebuild like so:
# revdep-rebuild --library 'libstdc\+\+\.so\.6'

For more details, feel free to peruse:
https://developerblog.redhat.com/2015/02/05/gcc5-and-the-c11-abi/
https://blogs.gentoo.org/blueness/2015/03/10/the-c11-abi-incompatibility-problem-in-gentoo/