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Bug 566364

Summary: sci-biology/repeatmasker-4.0.1: RepeatMaskerConfig.pm: No such file or directory
Product: Gentoo Linux Reporter: Martin Mokrejš <mmokrejs>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED OBSOLETE    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: build.log
emerge --info

Description Martin Mokrejš 2015-11-20 22:01:45 UTC
Created attachment 417484 [details]
build.log

sed: can't read /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker/RepeatMaskerConfig.pm: No such file or directory
 * ERROR: sci-biology/repeatmasker-4.0.1::gentoo failed (configure phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  93:  Called src_configure
 *   environment, line 225:  Called die
 * The specific snippet of code:
 *       sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
 *
Comment 1 Tomáš Mózes 2015-11-21 06:22:59 UTC
Please attach your emerge --info.
Comment 2 Martin Mokrejš 2015-11-21 08:08:32 UTC
Created attachment 417490 [details]
emerge --info