| Summary: | dev-python/h5py-2.5.0[mpi] - Cython.Compiler.Errors.CompileError: /var/tmp/portage/dev-python/h5py-2.5.0/work/h5py-2.5.0/h5py/h5p.pyx | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Juergen Rose <rose> |
| Component: | Current packages | Assignee: | Python Gentoo Team <python> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | benjamin.reveille, sci |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | build.log | ||
|
Description
Juergen Rose
2015-10-23 15:17:49 UTC
Exact same issue for me with > emerge --info Portage 2.2.23 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-4.9.3, glibc-2.22-r1, 4.0.5-gentoo x86_64) ================================================================= System uname: Linux-4.0.5-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9550_@_2.83GHz-with-gentoo-2.2 KiB Mem: 8190960 total, 1789212 free KiB Swap: 8189948 total, 7634896 free Timestamp of repository gentoo: Fri, 23 Oct 2015 02:15:01 +0000 sh bash 4.3_p42 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 distcc 3.2rc1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.3_p42::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.3.5-r2::gentoo, 3.4.3::gentoo, 3.5.0-r1::gentoo dev-util/cmake: 3.3.2-r1::gentoo dev-util/pkgconfig: 0.29::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.18.3::gentoo sys-apps/sandbox: 2.9::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.4_p6-r2::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.2::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r1::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage priority: -1000 dwardo location: /usr/local/portage masters: gentoo priority: 0 vmware location: /var/lib/layman/vmware masters: gentoo vmware priority: 50 Installed sets: @system ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 skype-eula googleearth AdobeFlash-10 AdobeFlash-10.1 AdobeFlash-10.3 AdobeFlash-11.x Oracle-BCLA-JavaSE Intel-SDP skype-4.0.0.7-copyright google-chrome" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=core2 -fomit-frame-pointer -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=core2 -fomit-frame-pointer -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--quiet-build=n --keep-going" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync metadata-transfer news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirrors.xservers.ro/gentoo/ http://mirror.qubenet.net/mirror/gentoo/ http://mirror.bih.net.ba/gentoo/ ftp://ftp.free.fr/mirrors/ftp.gentoo.org/" LANG="fr_FR.UTF-8" LC_ALL="fr_FR.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmpfs" USE="X a52 aac aacplus accessibility acl acpi aim alsa amd64 amr apache2 apng ass audiofile avahi bash-completion bcmath berkdb bidi bluetooth bzip2 cairo calendar captury ccache cdaudio cdda cddb cdinstall cdio cdr cec cgi chroot cli consolekit cpudetection cracklib crypt css cups cvs cxx dbus declarative device-mapper dga dhcp dirac divx dnd doc dri dts dv dvb dvd dvdr dvdread emacs embedded emboss emoticon enca encode evdev exif extras faac faad fam fame fat fbcon fbcondecor ffmpeg fftw firefox firefox3 flac flash font-server fontconfig fortran fortran2003 fpx fr freetype fts3 fuse g3dvl gcj gcl gd gdbm gif gimp git gl2ps glamor glib glibc-omitfp glitz gmail gmedia gmp gnutls goom gphoto2 gpm graphviz gs gsl gstreamer gtk gtk3 h323 highlight history hpcups hpn htmlhandbook httpd iconv icq icu ieee1394 imagemagick imap imlib ipod ithreads jabber jadetex java jemalloc jpeg jpeg2k kde kerberos kipi lapack lastfm lcms libnotify libv4l libv4l2 libwww lirc live lm_sensors logitech-mouse logrotate lua lzo mad math matroska mdnsresponder-compat messages mikmod mime minizip mjpeg mmx mmxext mng mod modplug modules motif mp3 mp3tunes mp4 mpeg mpeg2 mpi mplayer msn mtp multilib musepack musicbrainz mysql ncurses network nforce2 nfs nfsv4 nfsv41 nis nls nptl nsplugin ntfs nvcontrol nvidia nvtv objc ogg openal opencascade opengl openmp openssl oss pam pango parport parse-clocks pcre pdf pdfimport perl phonon pic plasma png policykit posix ppds projectm pulseaudio pvr python qml qt3support qt4 qt5 quicktime rar rdesktop readline real realmedia remote romio rtc rtmp rtsp samba sasl scanner schroedinger screen script sdl seccomp secure-delete semantic-desktop server session skins slang smbclient speex spell sql sqlite srt sse sse2 sse3 sse4_1 ssl ssse3 staging startup-notification stream subtitles subversion svg swat sysfs szip tcl tcpd tetex texteffect theora threads threadsafe thunderbird tidy tiff tk transcode truetype udev udisks unicode upnp upower usb utils v4l v4l2 vaapi vcd vdpau vdr videos vim vim-pager vim-syntax visualization vlm vorbis vpx wayland webkit webpresence webserver widgets win32codecs winpopup wmf wmp wxwidgets wxwindows x264 x265 xanim xattr xcb xcomposite xface xine xinerama xml xmlreader xmltv xosd xpm xscreensaver xulrunner xv xvfb xvid xvmc yahoo yv12 zeroconf zip zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests lbmethod_bytraffic lbmethod_bybusyness lbmethod_heartbeat log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="event" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 sse4_1 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse joystick evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="fr fr_FR en en_US en_GB" LIRC_DEVICES="default devinput" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" SANE_BACKENDS="hp hp3500 hp3900 hp4200 hp5400 hp5590 hpljm1005 hpsj5s" USERLAND="GNU" VIDEO_CARDS="nvidia nv v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON (In reply to Benjamin Réveillé from comment #1) > Exact same issue for me with > > > emerge --info Please attach "emerge --info package". Which USE are you using? (In reply to Justin Lecher from comment #2) > (In reply to Benjamin Réveillé from comment #1) > > Exact same issue for me with > > > > > emerge --info > > Please attach "emerge --info package". Which USE are you using? ================================================================= Package Settings ================================================================= dev-python/h5py-2.5.0::gentoo was built with the following: USE="doc mpi -examples -test" ABI_X86="64" PYTHON_TARGETS="python2_7 python3_4 -python3_3" CFLAGS="-O2 -march=core2 -fomit-frame-pointer -pipe -fno-strict-aliasing" Any news? commit 3f54a597796ca0ada6dca781c84e83466ca9ce1b Author: Justin Lecher <jlec@gentoo.org> Date: Tue Nov 17 10:23:23 2015 +0100 dev-python/h5py: Backport support for mpi4py-2 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563890 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3f54a597796ca0ada6dca781c84e83466ca9ce1b Synced and emerged ! fix confirmed for me worked for me now too. |
