| Summary: | sci-visualization/paraview-4.4.0: emerge fails during CMAKE configure stage due to MPI | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Stephen Bosch <posting> |
| Component: | Current packages | Assignee: | Matthias Maier <tamiko> |
| Status: | RESOLVED DUPLICATE | ||
| Severity: | normal | CC: | toralf |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | AMD64 | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
*** Bug 570514 has been marked as a duplicate of this bug. *** *** This bug has been marked as a duplicate of bug 586934 *** |
When attempting to emerge paraview-4.4.0, emerge fails at the configure stage. Here is the end of config.log: -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C -O2 -march=native -pipe C++ -O2 -march=native -pipe Linker flags: Executable -Wl,-O1 -Wl,--as-needed Module -Wl,-O1 -Wl,--as-needed Shared -Wl,-O1 -Wl,--as-needed CMake Error: The following variables are used in this project, but they are set to NOTFOUND. Please set them or make sure they are set and tested correctly in the CMake files: MPI_C_LIBRARIES (ADVANCED) linked by target "pmpi-vt" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py linked by target "pmpi-mpe" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py linked by target "pmpi-vt-hyb" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py linked by target "mpi4py.MPE" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py linked by target "mpi4py.MPI" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py linked by target "pmpi-vt-mpi" in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py MPI_HEADER_PATH used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py used as include directory in directory /var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source/VTK/ThirdParty/mpi4py/vtkmpi4py -- Configuring incomplete, errors occurred! See also "/var/tmp/portage/sci-visualization/paraview-4.4.0/work/paraview-4.4.0_build/CMakeFiles/CMakeOutput.log". See also "/var/tmp/portage/sci-visualization/paraview-4.4.0/work/paraview-4.4.0_build/CMakeFiles/CMakeError.log". * ERROR: sci-visualization/paraview-4.4.0::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 93: Called src_configure * environment, line 3859: Called cmake-utils_src_configure * environment, line 966: Called _execute_optionally 'src_configure' * environment, line 398: Called enable_cmake-utils_src_configure * environment, line 1294: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-visualization/paraview-4.4.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-visualization/paraview-4.4.0::gentoo'`. * The complete build log is located at '/var/tmp/portage/sci-visualization/paraview-4.4.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-visualization/paraview-4.4.0/temp/environment'. * Working directory: '/var/tmp/portage/sci-visualization/paraview-4.4.0/work/paraview-4.4.0_build' * S: '/var/tmp/portage/sci-visualization/paraview-4.4.0/work/ParaView-v4.4.0-source' The mpi use flag is not set. Reproducible: Always Steps to Reproduce: 1. ensure that USE flags and python targets are set like so: USE="python qt4 sqlite -boost -cg -coprocessing -development -doc -examples -ffmpeg -mpi -mysql -nvcontrol -plugins -tcl {-test} -tk" PYTHON_TARGETS="python2_7" 2. emerge -av sci-visualization/paraview-4.4.0 Expected Results: It should configure and build normally, of course :) emerge --info: # emerge --info Portage 2.2.20.1 (python 3.3.5-final-0, default/linux/amd64/13.0/desktop, gcc-4.8.5, glibc-2.20-r2, 3.18.16-gentoo x86_64) ================================================================= System uname: Linux-3.18.16-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T9400_@_2.53GHz-with-gentoo-2.2 KiB Mem: 8089536 total, 1648688 free KiB Swap: 4095996 total, 4095996 free sh bash 4.3_p39 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p39::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.10::gentoo, 3.3.5-r2::gentoo, 3.4.3::gentoo dev-util/cmake: 3.2.2::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.4.7::gentoo, 4.7.3-r1::gentoo, 4.8.5::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 kde location: /var/lib/layman/kde masters: gentoo priority: 0 tox-overlay location: /var/lib/layman/tox-overlay masters: gentoo priority: 1 science location: /var/lib/layman/science masters: gentoo priority: 2 gis location: /var/lib/layman/gis masters: gentoo priority: 3 testing location: /usr/local/portage masters: gentoo priority: 4 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -march=native -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://mirror.netcologne.de/gentoo/ rsync://mirror.netcologne.de/gentoo/" LANG="de_DE.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 amr bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus device-mapper dri dts dvd dvdr emboss encode exif extras faac fam firefox flac fortran gdbm gif gimp glamor gpm gtk hwdb iconv icu ipv6 jpeg kde kdeprefix laptop lcms ldap libnotify lm_sensors mad mmx mmxext mng modules mp3 mp4 mpeg multilib ncurses nls nptl nsplugin ogg opengl openmp pam pango parport pcre pdf perl png policykit ppds python qt3support qt4 readline rtmp sdl seccomp semantic-desktop session spell sqlite sse sse2 sse3 ssl ssse3 startup-notification svg taglib tcpd theora threads tiff truetype udev udisks unicode upower usb v4l video vorbis win32codecs wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr nb nb_NO en_GB en_CA" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel vesa radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7 3.3" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS