Bug 556260

Summary:	dev-libs/ntl-9.3.0 has weird shared library symlinks
Product:	Gentoo Linux	Reporter:	Dennis Schridde <dschridde+gentoobugs>
Component:	[OLD] Library	Assignee:	Gentoo Linux bug wranglers <bug-wranglers>
Status:	RESOLVED INVALID
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---

Description Dennis Schridde 2015-07-29 18:50:25 UTC

# ll /usr/lib64/libntl*
-rwxr-xr-x 1 root root 2215752 Jul 28 08:17 /usr/lib64/libntl-9.3.0.so
lrwxrwxrwx 1 root root      15 Jul 28 08:16 /usr/lib64/libntl.so -> libntl-9.3.0.so
lrwxrwxrwx 1 root root      15 Jun 22 04:53 /usr/lib64/libntl.so.5 -> libntl.so.5.0.0
-rwxr-xr-x 1 root root 1963616 Jun 22 04:53 /usr/lib64/libntl.so.5.0.0

# q file -v /usr/lib64/libntl*
dev-libs/ntl-9.3.0 (/usr/lib64/libntl-9.3.0.so)
dev-libs/ntl-9.3.0 (/usr/lib64/libntl.so)
dev-libs/ntl-9.3.0 (/usr/lib64/libntl.so.5)
dev-libs/ntl-9.3.0 (/usr/lib64/libntl.so.5.0.0)

This also seems to lead to a stuck preserved-libs situation:
>>> package: dev-libs/ntl-9.3.0
 *  - /usr/lib64/libntl.so.5
 *  - /usr/lib64/libntl.so.5.0.0
 *      used by /usr/bin/Singular-3-1-7 (sci-mathematics/singular-3.1.7_p1-r3)

Reemerging sci-mathematics/singular succeeds, but does not remove this preserved-libs message.

Reproducible: Always




# emerge --info singular ntl
Portage 2.2.20 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/plasma/systemd, gcc-4.9.3, glibc-2.21-r1, 4.1.3-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.1.3-gentoo-x86_64-AMD_A10-7800_Radeon_R7,_12_Compute_Cores_4C+8G-with-gentoo-2.2
KiB Mem:    15315596 total,   7685088 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Wed, 29 Jul 2015 14:45:01 +0000
sh bash 4.3_p39
ld GNU ld (Gentoo 2.25.1 p1.0) 2.25.1
ccache version 3.2.2 [disabled]
app-shells/bash:          4.3_p39::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.10::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/ccache:          3.2.2::gentoo
dev-util/cmake:           3.3.0::gentoo
dev-util/pkgconfig:       0.28-r3::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r1::gentoo
Repositories:

gentoo
    location: /var/cache/portage/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage
    priority: -1000

kde
    location: /var/lib/layman/kde
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/proj/kde.git
    masters: gentoo
    priority: 50

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    sync-type: laymansync
    sync-uri: git://github.com/cschwan/sage-on-gentoo.git
    masters: gentoo
    priority: 50

local
    location: /var/cache/portage/local
    masters: gentoo
    priority: 100

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -march=bdver3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-pipe -O2 -march=bdver3"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --nospinner"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildsyspkg compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j6"
PKGDIR="/var/cache/portage/packages"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aacplus aacs acl acpi alsa amd64 audit avahi bash-completion bdplus berkdb bluetooth bluray branding bzip2 cairo caps cdda cddb cdio cdr celt cjk cli cracklib crypt cups cxx dbus declarative dirac dri dts dvb dvd dvdr egl emboss encode exif fam fax ffmpeg firefox flac fontconfig fortran gdbm gif glamor gles gles2 gmp gpm gstreamer gtk ibus iconv ipv6 jpeg jpeg2k kde kipi ladspa latex lcms ldap libnotify libsecret lua_target_lua5-2 lv2 lz4 lzma lzo mad mmx mmxext mng modemmanager modplug modules mp3 mp4 mpeg mplayer mtp multilib multitarget mysql ncurses networkmanager nls nptl ogg openal opencl openexr opengl openmax openmp opus pam pango pch pcre pdf phonon plasma png policykit ppds pulseaudio qml qt3support qt4 qt5 readline rtmp samba scanner schroedinger sctp sdl semantic-desktop session speex spell sse sse2 ssl startup-notification subversion svg systemd tcpd theora threads tiff truetype udev udisks unicode upnp upnp-av upower usb v4l vaapi vdpau vorbis vpx wavpack wayland webp widgets x264 x265 xattr xcb xcomposite xinerama xml xscreensaver xv xvid xz zeroconf zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="stage words flow sheets" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext sse sse2 sse3" DRACUT_MODULES="btrfs caps systemd" ELIBC="glibc" ENLIGHTENMENT_MODULES="*" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="coreboot efi-64 pc" INPUT_DEVICES="evdev joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en en_GB ar fa" LIRC_DEVICES="devinput" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="radeon radeonsi r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

sci-mathematics/singular-3.1.7_p1-r3::sage-on-gentoo was built with the following:
USE="readline -boost -doc -emacs -examples -flint -python -test" ABI_X86="64" PYTHON_TARGETS="python2_7"
CFLAGS="-pipe -O2 -march=bdver3 -fPIC"
CXXFLAGS="-pipe -O2 -march=bdver3 -fPIC"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fPIC"


dev-libs/ntl-9.3.0::gentoo was built with the following:
USE="-doc -static-libs -test" ABI_X86="64"

Comment 1 Dennis Schridde 2015-08-01 12:00:39 UTC

libntl.so.5 was the preserved-lib and did not actually belong to dev-libs/ntl-9.3.0. Somehow reemerging =sci-mathematics/singular-3.1.7_p1-r3 today got me rid of /usr/lib64/libntl.so.5.0.0.