Bug 555252 – games-util/nml-0.4.1 :PIL/_imaging.cpython-33.so: undefined symbol: pthread_join

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Toralf Förster 2015-07-18 09:39:51 UTC]

Created attachment 407064 [details]
package history

maybe similar to bug #514008 :

 * Package:    games-util/nml-0.4.1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_3 userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking nml-0.4.1.tar.gz to /var/tmp/portage/games-util/nml-0.4.1/work
>>> Source unpacked in /var/tmp/portage/games-util/nml-0.4.1/work
>>> Preparing source in /var/tmp/portage/games-util/nml-0.4.1/work/nml-0.4.1 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/games-util/nml-0.4.1/work/nml-0.4.1 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/games-util/nml-0.4.1/work/nml-0.4.1 ...
 * python3_3: running distutils-r1_run_phase distutils-r1_python_compile
/usr/bin/python3.3 setup.py build
Traceback (most recent call last):
  File "setup.py", line 10, in <module>
    from PIL import Image
  File "/usr/lib64/python3.3/site-packages/PIL/Image.py", line 63, in <module>
    from PIL import _imaging as core
ImportError: /usr/lib64/python3.3/site-packages/PIL/_imaging.cpython-33.so: undefined symbol: pthread_join
 * ERROR: games-util/nml-0.4.1::gentoo failed (compile phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line   93:  Called src_compile
 *   environment, line 3714:  Called distutils-r1_src_compile
 *   environment, line 1117:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 *   environment, line  369:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3303:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2427:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2425:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line  800:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 *   environment, line 1108:  Called distutils-r1_python_compile
 *   environment, line  988:  Called esetup.py 'build'
 *   environment, line 1596:  Called die
 * The specific snippet of code:
 *       "${@}" || die
 * 
 * If you need support, post the output of `emerge --info '=games-util/nml-0.4.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=games-util/nml-0.4.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/games-util:nml-0.4.1:20150718-093518.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/games-util/nml-0.4.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/games-util/nml-0.4.1/temp/environment'.
 * Working directory: '/var/tmp/portage/games-util/nml-0.4.1/work/nml-0.4.1'
 * S: '/var/tmp/portage/games-util/nml-0.4.1/work/nml-0.4.1'

  -----------------------------------------------------------------

  This is an stable amd64 chroot image (named amd64-hardened-stable_20150708-150300) at a hardened host acting as a tinderbox.

Portage 2.2.20 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.8.4, glibc-2.20-r2, 4.0.8-hardened x86_64)
=================================================================
System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164692 total,   1417352 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 18 Jul 2015 05:45:01 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.24 p1.4) 2.24
ccache version 3.1.9 [disabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r1::gentoo, 3.3.5-r1::gentoo, 3.4.1::gentoo
dev-util/ccache:          3.1.9-r4::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.24-r3::gentoo
sys-devel/gcc:            4.8.4::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

local
    location: /usr/local/portage
    masters: gentoo

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 9999

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/easy-rsa /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="acl aes-ni alsa amd64 apache2 avx avx2 berkdb btrfs bzip2 cairo cgi cli corefonts cracklib crypt cups curl cxx dbus designer dnssec dot dri drmkms dvd ecc extraengine fortran fpm gd gdbm gif gnutls gtk gudev gui hardened iconv icu imap introspection ipv6 jadetex jpeg justify kvm lapack libkms libvirtd logrotate mbox minizip mmx mmxext modules multilib mysql ncurses nls nptl nss opencv openmp pam pax_kernel pcre pcre16 pdo pie plasma png policykit pulseaudio pwquality python qml qt3support qt4 qt5 readline scrpyt sdl session smartcard spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssp ssse3 tcl tcpd tls truetype uml unicode urandom usb usbredir v4l v4l2 video widgets xattr xkb xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb nc urses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Felix Janda 2015-07-18 11:27:34 UTC]

Just typing 'from PIL import imaging' in python gives the same error,
doesn't it?

Then this is more likely a bug in dev-python/pillow (not passing -pthread
to gcc when linking _imaging.cpython-33.so). Could you post a build log
of pillow?

[Comment 2 Toralf Förster 2015-07-18 13:58:13 UTC]

Created attachment 407078 [details]
pillow emerge log

[Comment 3 Mr. Bones. (RETIRED) 2015-09-22 05:11:53 UTC]

(In reply to Felix Janda from comment #1)
> Just typing 'from PIL import imaging' in python gives the same error,
> doesn't it?
> 
> Then this is more likely a bug in dev-python/pillow (not passing -pthread
> to gcc when linking _imaging.cpython-33.so). Could you post a build log
> of pillow?

looks like this is the case so I'm re-assigning to the python team.

[Comment 4 Pacho Ramos 2016-04-17 11:57:51 UTC]

>>> from PIL import _imaging as core
>>> 


That looks to work ok now

[Comment 5 Pacho Ramos 2018-03-01 13:51:48 UTC]

and game also compiles now