Bug 551618

Summary:	sci-mathematics/gretl-1.9.90 : libgretl-1.0.so: undefined reference to `dpocon_'
Product:	Gentoo Linux	Reporter:	Jason Mours <jason.mours>
Component:	[OLD] Library	Assignee:	Gentoo Science Mathematics related packages <sci-mathematics>
Status:	RESOLVED NEEDINFO
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log emerge-info

Description Jason Mours 2015-06-09 22:51:58 UTC

sci-mathematics/gretl-1.9.90 fails emerge with the following output :

libtool: compile:  gcc -c -march=native -mtune=amdfam10 -Os -pipe -ggdb -I.. -I../gui2 -DHAVE_CONFIG_H -I../lib/src -I/usr/include/libxml2 -I../plugin -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I../plugin/zipunzip -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/include -I. jalpha.c  -fPIC -DPIC -o .libs/jalpha.o
../lib/.libs/libgretl-1.0.so: undefined reference to `dpocon_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dorgqr_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dpotrf_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgemm_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dpotri_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dpotrs_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dtrcon_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgetri_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgglse_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgeev_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dsycon_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgetrf_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dsytri_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgels_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dsytrf_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgeqrf_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgelss_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgesvd_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dsyrk_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgecon_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dsyev_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dtrtri_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dgetrs_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dpptri_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dpptrf_'
../lib/.libs/libgretl-1.0.so: undefined reference to `dlamch_'
collect2: error: ld returned 1 exit status
libtool: compile:  gcc -c -march=native -mtune=amdfam10 -Os -pipe -ggdb -I.. -I../gui2 -DHAVE_CONFIG_H -I../lib/src -I/usr/include/libxml2 -I../plugin -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I../plugin/zipunzip -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/include -I. range-mean.c  -fPIC -DPIC -o .libs/range-mean.o
Makefile:95: recipe for target 'gretlcli' failed
make[1]: *** [gretlcli] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-mathematics/gretl-1.9.90/work/gretl-1.9.90/cli'
Makefile:59: recipe for target 'cli' failed
make: *** [cli] Error 2
make: *** Waiting for unfinished jobs....

: Posting build.log

Comment 1 Jason Mours 2015-06-09 22:52:31 UTC

Created attachment 404850 [details]
build.log

Comment 2 Jason Mours 2015-06-09 22:52:57 UTC

Created attachment 404852 [details]
emerge-info

Comment 3 Ted Tanberry 2015-12-27 22:34:19 UTC

in the log, it says:

checking for LAPACK... no
*** Could not run LAPACK test program, checking why...
*** The test program compiled, but did not run. This usually means
*** that the run-time linker is not finding LAPACK. If it is not
*** finding LAPACK, you'll need to set your LD_LIBRARY_PATH 
*** environment variable, or edit /etc/ld.so.conf to point
*** to the installed location.  Also, make sure you have run
*** ldconfig if that is required on your system.
***

which is the culprit. 'dpocon_' is a LAPACK symbol, without which the final executable will never link up. Try running "eselect lapack set reference" and then try emerging again.