Summary: | dev-java/ant-1.9.2 or dev-java/ant-core-1.9.2: no org.apache.tools.bzip2 installed | ||
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Product: | Gentoo Linux | Reporter: | Martin Mokrejš <mmokrejs> |
Component: | Current packages | Assignee: | Gentoo Linux bug wranglers <bug-wranglers> |
Status: | RESOLVED WONTFIX | ||
Severity: | normal | CC: | fordfrog, jstein |
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- |
Description
Martin Mokrejš
2015-05-12 19:01:59 UTC
dev-java/ant is indeed a virtual package. ant-core provides this class. chewi@symphony % jar tf /usr/share/ant-core/lib/ant.jar | fgrep CBZip2InputStream org/apache/tools/bzip2/CBZip2InputStream$Data.class org/apache/tools/bzip2/CBZip2InputStream.class I can't look into it now but it's probably a problem with the picard build itself. this bug is pretty old. as well as sci-biology/picard-1.103. i suggest maintainers bump picard to the latest 2.25.2 from https://github.com/broadinstitute/picard. if the issue would not be fixedd with the latest release then we can try to fix it. Picard cannot be bumped to latest because they switched from apache ant to gradle. In the tree used to be the last version of picard and gatk which was using apache ant for building. If it is 1.103 I am not certain from top of my head but it was tracked in changelog or in ebuild comments. |