Bug 544464 – sci-astronomy/aatm-0.4.3.1 - SMATest.cpp:39:39: fatal error: ATMRefractiveIndexProfile.h: No such file or directory

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Toralf Förster 2015-03-25 14:17:06 UTC]

Created attachment 399732 [details]
emerge log

y/aatm-0.4.3.1/work/aatm-0.4.3.1/src/'`ATMWaterVaporRadiometer.cpp
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I.. -Wall -march=native -O2 -pipe -c /var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/ATMWaterVaporRadiometer.cpp  -fPIC -DPIC -o .libs/libaatm_la-ATMWaterVaporRadiometer.o
/bin/sh ../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I..  -Wall   -march=native -O2 -pipe -c -o libaatm_la-ATMWVRMeasurement.lo `test -f 'ATMWVRMeasurement.cpp' || echo '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/'`ATMWVRMeasurement.cpp
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I.. -Wall -march=native -O2 -pipe -c /var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/ATMWVRMeasurement.cpp  -fPIC -DPIC -o .libs/libaatm_la-ATMWVRMeasurement.o
/bin/sh ../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I..  -Wall   -march=native -O2 -pipe -c -o libaatm_la-ATMException.lo `test -f 'ATMException.cpp' || echo '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/'`ATMException.cpp
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I.. -Wall -march=native -O2 -pipe -c /var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/ATMException.cpp  -fPIC -DPIC -o .libs/libaatm_la-ATMException.o
/bin/sh ../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I..  -Wall   -march=native -O2 -pipe -c -o libaatm_la-ATMVersion.lo `test -f 'ATMVersion.cpp' || echo '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/'`ATMVersion.cpp
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src -I.. -Wall -march=native -O2 -pipe -c /var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/src/ATMVersion.cpp  -fPIC -DPIC -o .libs/libaatm_la-ATMVersion.o
/bin/sh ../libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -version-info 2:3:0 -Wl,-O1 -Wl,--as-needed -o libaatm.la -rpath /usr/lib64 libaatm_la-ATMAngle.lo libaatm_la-ATMError.lo libaatm_la-ATMFrequency.lo libaatm_la-ATMInverseLength.lo libaatm_la-ATMLength.lo libaatm_la-ATMMassDensity.lo libaatm_la-ATMNumberDensity.lo libaatm_la-ATMOpacity.lo libaatm_la-ATMPercent.lo libaatm_la-ATMPressure.lo libaatm_la-ATMProfile.lo libaatm_la-ATMRefractiveIndex.lo libaatm_la-ATMRefractiveIndexProfile.lo libaatm_la-ATMSkyStatus.lo libaatm_la-ATMSpectralGrid.lo libaatm_la-ATMTemperature.lo libaatm_la-ATMWaterVaporRadiometer.lo libaatm_la-ATMWVRMeasurement.lo libaatm_la-ATMException.lo libaatm_la-ATMVersion.lo  
libtool: link: x86_64-pc-linux-gnu-g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/crtbeginS.o  .libs/libaatm_la-ATMAngle.o .libs/libaatm_la-ATMError.o .libs/libaatm_la-ATMFrequency.o .libs/libaatm_la-ATMInverseLength.o .libs/libaatm_la-ATMLength.o .libs/libaatm_la-ATMMassDensity.o .libs/libaatm_la-ATMNumberDensity.o .libs/libaatm_la-ATMOpacity.o .libs/libaatm_la-ATMPercent.o .libs/libaatm_la-ATMPressure.o .libs/libaatm_la-ATMProfile.o .libs/libaatm_la-ATMRefractiveIndex.o .libs/libaatm_la-ATMRefractiveIndexProfile.o .libs/libaatm_la-ATMSkyStatus.o .libs/libaatm_la-ATMSpectralGrid.o .libs/libaatm_la-ATMTemperature.o .libs/libaatm_la-ATMWaterVaporRadiometer.o .libs/libaatm_la-ATMWVRMeasurement.o .libs/libaatm_la-ATMException.o .libs/libaatm_la-ATMVersion.o   -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../lib64/crtn.o  -march=native -O2 -Wl,-O1 -Wl,--as-needed   -Wl,-soname -Wl,libaatm.so.2 -o .libs/libaatm.so.2.0.3
libtool: link: (cd ".libs" && rm -f "libaatm.so.2" && ln -s "libaatm.so.2.0.3" "libaatm.so.2")
libtool: link: (cd ".libs" && rm -f "libaatm.so" && ln -s "libaatm.so.2.0.3" "libaatm.so")
libtool: link: ( cd ".libs" && rm -f "libaatm.la" && ln -s "../libaatm.la" "libaatm.la" )
make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build/src'
Making all in otest
make[2]: Entering directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build/otest'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build/otest'
Making all in test
make[2]: Entering directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build/test'
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/test -I.. -I../src -DBOOST_TEST_DYN_LINK -I/usr/include   -march=native -O2 -pipe -c -o SMATest.o /var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/test/SMATest.cpp
/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1/test/SMATest.cpp:39:39: fatal error: ATMRefractiveIndexProfile.h: No such file or directory
 #include "ATMRefractiveIndexProfile.h"
                                       ^
compilation terminated.
Makefile:466: recipe for target 'SMATest.o' failed
make[2]: *** [SMATest.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build/test'
Makefile:466: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build'
Makefile:373: recipe for target 'all' failed
make: *** [all] Error 2
 * ERROR: sci-astronomy/aatm-0.4.3.1::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-astronomy/aatm-0.4.3.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-astronomy/aatm-0.4.3.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-astronomy:aatm-0.4.3.1:20150325-084237.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1_build'
 * S: '/var/tmp/portage/sci-astronomy/aatm-0.4.3.1/work/aatm-0.4.3.1'


This is an amd64 unstable chroot image at a hardened host acting as a tinderbox.
The log is stored in amd64-unstable-libtool_20150314//var/log/portage/_emerge_20150325-094316.log
quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=sci-astronomy%2Faatm


Portage 2.2.18 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/kde, gcc-4.8.3, glibc-2.20-r2, 3.19.2-hardened x86_64)
=================================================================
System uname: Linux-3.19.2-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164756 total,   2444068 free
KiB Swap:   16777212 total,  16748092 free
Timestamp of repository gentoo: Tue, 24 Mar 2015 15:30:01 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.25 p1.0) 2.25
ccache version 3.2.1 [disabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r2::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/ccache:          3.2.1-r1::gentoo
dev-util/cmake:           3.1.0::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.13.11::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25::gentoo
sys-devel/gcc:            4.8.3::gentoo, 4.9.2::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.19::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
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CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /opt/openfire/resources/security/ /usr/lib64/fax /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/neatx/home /var/spool/fax/etc /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
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FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
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PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
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Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Sébastien Fabbro (RETIRED) 2016-06-09 19:02:56 UTC]

aatm-0.4.3.1 is gone.