Bug 541940 – dev-libs/dbxml-2.5.16-r2: python_pkg_setup() not called

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Toralf Förster 2015-03-02 19:36:09 UTC]

Created attachment 397894 [details]
emerge log

ipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/helloWorldTxn helloWorldTxn.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o query.o `test -f 'examples/cxx/basic/query.cpp' || echo '../'`examples/cxx/basic/query.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o query query.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/query query.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o queryTxn.o `test -f 'examples/cxx/basic/queryTxn.cpp' || echo '../'`examples/cxx/basic/queryTxn.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o queryTxn queryTxn.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/queryTxn queryTxn.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o xercesDomTranslator.o `test -f 'examples/cxx/xerces/xercesDomTranslator.cpp' || echo '../'`examples/cxx/xerces/xercesDomTranslator.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o xercesDomTranslator xercesDomTranslator.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/xercesDomTranslator xercesDomTranslator.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o externalFunction.o `test -f 'examples/cxx/misc/externalFunction.cpp' || echo '../'`examples/cxx/misc/externalFunction.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o externalFunction externalFunction.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/externalFunction externalFunction.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o compression.o `test -f 'examples/cxx/misc/compression.cpp' || echo '../'`examples/cxx/misc/compression.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o compression compression.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/compression compression.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -D_ISOC99_SOURCE -D_GNU_SOURCE -D_REENTRANT -I../include/ -I../src/dbxml -I../src/common -I/usr/include -I/usr/include -I/usr/include    -march=native -O2 -pipe -I/usr/include/db4.8 -c -o debug.o `test -f 'examples/cxx/misc/debug.cpp' || echo '../'`examples/cxx/misc/debug.cpp
/bin/sh ./libtool  --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -I/usr/include/db4.8  -Wl,-O1 -Wl,--as-needed -L/usr/lib -L/usr/lib -L/usr/lib  -ldb-4.8 -lxqilla -lxerces-c  -o debug debug.o libdbxml.la 
libtool: link: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -I/usr/include/db4.8 -Wl,-O1 -Wl,--as-needed -o .libs/debug debug.o  -L/usr/lib -L/usr/lib64 ./.libs/libdbxml.so /usr/lib64/libdb-4.8.so /usr/lib64/libxqilla.so /usr/lib64/libxerces-c.so -lnsl -lpthread -licui18n -licuuc -licudata
make[1]: Leaving directory '/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml/build_unix'
 * Compiling python extension
 * ERROR: dev-libs/dbxml-2.5.16-r2::gentoo failed (compile phase):
 *   python_pkg_setup() not called
 * 
 * Call stack:
 *     ebuild.sh, line   93:  Called src_compile
 *   environment, line 8171:  Called distutils_src_compile
 *   environment, line 1766:  Called _python_check_python_pkg_setup_execution
 *   environment, line  983:  Called die
 * The specific snippet of code:
 *           die "python_pkg_setup() not called";
 * 
 * If you need support, post the output of `emerge --info '=dev-libs/dbxml-2.5.16-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-libs/dbxml-2.5.16-r2::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME=""
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =dbxml-2.5.16
 * The complete build log is located at '/var/log/portage/dev-libs:dbxml-2.5.16-r2:20150302-180610.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml/src/python'
 * S: '/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml'

!!! existing preserved libs found


        This is a amd64  hardened-unstable  chroot build bot image named amd64-hardened-unstable.1 at a hardened host.
        quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=dev-libs%2Fdbxml

        
Portage 2.2.14 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.9.2, glibc-2.19-r1, 3.18.8-hardened x86_64)
=================================================================
System uname: Linux-3.18.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164808 total,   2056300 free
KiB Swap:   16777212 total,  16759952 free
Timestamp of tree: Sun, 01 Mar 2015 00:45:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.2_p53
dev-lang/perl:            5.20.2
dev-lang/python:          2.7.9-r2, 3.3.5-r1
dev-util/pkgconfig:       0.28-r1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.11
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.10.3-r1, 1.11.6-r1, 1.12.6, 1.13.4
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.3, 4.9.2
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.4
sys-devel/make:           4.1-r1
sys-kernel/linux-headers: 3.16 (virtual/os-headers)
sys-libs/glibc:           2.19-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --quiet --deep --jobs 1"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cairo cli corefonts cracklib crypt cups cxx dbus dnssec dot dri drmkms dvd ecc extraengine ffmpeg fontconfig fortran fpm gd gdbm gif gtk gudev gui hardened iconv icu isag jadetex jpeg justify lapack libav libkms libvirtd logrotate macvtap mbox minizip mmx modules multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pax_kernel pcre pcre16 plasma png policykit python qemu qt3support qt5 readline session spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 svg tcpd theora thinkpad threads tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 video vorbis xa xattr xkb xmp xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console  presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

[Comment 1 Toralf Förster 2015-05-17 17:53:54 UTC]

FWIW it happened here at a ~amd64 chroot tinderbox image again (so not hardened related).

[Comment 2 Toralf Förster 2016-04-26 09:42:08 UTC]

Hhm, it is hardened related -sry :


Apr 26 05:50:56 ms-magpie kernel: [411174.292316] grsec: From 78.54.158.7: denied untrusted exec (due to file in group-writable directory) of /home/tinderbox/images1/amd64-plasma-unstable_20160423-224414/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml/configure by /home/tinderbox/images1/amd64-plasma-unstable_20160423-224414/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml/configure[ebuild.sh:8700] uid/euid:250/250 gid/egid:250/250, parent /home/tinderbox/images1/amd64-plasma-unstable_20160423-224414/usr/lib64/portage/python3.4/ebuild.sh[ebuild.sh:8674] uid/euid:250/250 gid/egid:250/250
ms-magpie



and


..//configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-berkeleydb=/usr --with-xqilla=/usr --with-xerces=/usr
/usr/lib/portage/python3.4/phase-helpers.sh: ..//configure: /bin/sh: bad interpreter: Permission denied
 * ERROR: dev-libs/dbxml-2.5.16-r2::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:

[Comment 3 Toralf Förster 2016-05-08 08:56:47 UTC]

Created attachment 433582 [details]
emerge-info.txt

fixed the hardened thing, but this issue does still existmake[1]: Leaving directory '/var/tmp/portage/dev-libs/dbxml-2.5.16-r2/work/dbxml-2.5.16/dbxml/build_unix'
 * Compiling python extension
 * ERROR: dev-libs/dbxml-2.5.16-r2::gentoo failed (compile phase):
 *   python_pkg_setup() not called
 * 
 * Call stack:

[Comment 4 Toralf Förster 2016-05-08 08:56:49 UTC]

Created attachment 433584 [details]
dev-libs:dbxml-2.5.16-r2:20160508-000541.log

[Comment 5 Toralf Förster 2016-05-08 08:56:52 UTC]

Created attachment 433586 [details]
emerge-history.txt

[Comment 6 Toralf Förster 2016-05-08 08:56:55 UTC]

Created attachment 433588 [details]
environment

[Comment 7 Michał Górny 2016-10-31 16:26:09 UTC]

commit da253eac667e11739983080fbeb18a08766435cd
Author:     Michał Górny <[e-mail]>
AuthorDate: Mon Oct 31 17:19:50 2016
Commit:     Michał Górny <[e-mail]>
CommitDate: Mon Oct 31 17:24:44 2016

    dev-libs/dbxml: Remove last-rited pkg, #594236