Bug 540746 – sys-devel/llvm-9999::gentoo file collision: /usr/bin/python-exec2

• Product: Gentoo Linux
• Status: RESOLVED DUPLICATE

[Description Marcin Mirosław 2015-02-20 11:28:17 UTC]

>>> Emerging binary (1 of 1) sys-devel/llvm-9999::gentoo
 * llvm-9999.tbz2 MD5 SHA1 size ;-) ...                                  [ ok ]
>>> Extracting info
>>> Extracting sys-devel/llvm-9999

>>> Installing (1 of 1) sys-devel/llvm-9999::gentoo
 * This package will overwrite one or more files that may belong to other
 * packages (see list below). You can use a command such as `portageq
 * owners / <filename>` to identify the installed package that owns a
 * file. If portageq reports that only one package owns a file then do
 * NOT file a bug report. A bug report is only useful if it identifies at
 * least two or more packages that are known to install the same file(s).
 * If a collision occurs and you can not explain where the file came from
 * then you should simply ignore the collision since there is not enough
 * information to determine if a real problem exists. Please do NOT file
 * a bug report at http://bugs.gentoo.org unless you report exactly which
 * two packages install the same file(s). See
 * http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
 * solve the problem. And once again, please do NOT file a bug report
 * unless you have completely understood the above message.
 * 
 * package sys-devel/llvm-9999 NOT merged
 * 
 * Detected file collision(s):
 * 
 *      /usr/bin/python-exec2
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-python/docutils-0.12:0::gentoo
 *      /usr/bin/python-exec2
 * 
 * Package 'sys-devel/llvm-9999' NOT merged due to file collisions. If
 * necessary, refer to your elog messages for the whole content of the
 * above message.

>>> Failed to install sys-devel/llvm-9999, Log file:

>>>  '/var/tmp/portage/sys-devel/llvm-9999/temp/build.log'

Reproducible: Always




# emerge --info
Portage 2.2.17 (python 3.3.5-final-0, default/linux/amd64/13.0/desktop/kde, gcc-4.9.2, glibc-2.20-r2, 3.18.6-gentoo x86_64)
=================================================================
System uname: Linux-3.18.6-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q6600_@_2.40GHz-with-gentoo-2.2
KiB Mem:     4554752 total,   1419252 free
KiB Swap:    6291452 total,   5604420 free
Timestamp of repository gentoo: Fri, 20 Feb 2015 06:30:01 +0000
sh bash 4.3_p33-r1
ld GNU ld (Gentoo 2.25 p1.0) 2.25
ccache version 3.2.1 [enabled]
app-shells/bash:          4.3_p33-r1::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r2::gentoo, 3.3.5-r1::gentoo, 3.4.2::gentoo
dev-util/ccache:          3.2.1-r1::gentoo
dev-util/cmake:           3.1.0::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.13.11::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.15::gentoo
sys-devel/binutils:       2.25::gentoo
sys-devel/gcc:            4.7.4::gentoo, 4.9.2::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.19::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://192.168.138.254/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs ccache cgroup collision-protect compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.prz.rzeszow.pl"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -z relro -Wl,--sort-common -O2 -march=native -pipe -fpeel-loops -frename-registers -fno-unwind-tables -fno-asynchronous-unwind-tables           -fpredictive-commoning -fweb -ftree-vectorize -floop-interchange -fivopts -ftree-loop-distribution           -freorder-blocks-and-partition           -floop-block -floop-strip-mine -fira-loop-pressure -floop-interchange -ftree-loop-linear -Wdisabled-optimization   -fuse-linker-plugin"
MAKEOPTS="-j4 -l5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="-O"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi aio alsa amd64 apm async bash-completion bittorrent branding bzip2 cairo caps cdda cdr chroot cli consolekit crypt cups cxx dbus declarative dmx dri dvd dvdr emboss encode exif fam firefox ftp gif glamor glibc-omitfp gpm graphite gstreamer iconv idn iproute2 ipv6 ithreads jpeg kde kipi laptop lcms libav libnotify lightning logrotate mad mmap mmx mng modules mp3 mp4 mpeg multilib ncurses network-cron nls nptl nsplugin nspluginwrapper objc ogg opengl openmp openssl optimization optimized-qmake pam pango pch pcre pdf phonon plasma png policykit ppds python3 qt3support qt4 readline samba sdl semantic-desktop session sharedmem smp spell sse sse2 ssl startup-notification svg threads threadsafe tiff tools truetype udev udisks unicode unwind upower urandom usb vim vim-pager vim-syntax vorbis wxwidgets x264 xattr xcb xcomposite xinerama xml xscreensaver xv xvid zip zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cgid dav dbd deflate dir env expires ext_filter filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx sse sse2 sse3 ssse3" DRACUT_MODULES="caps lvm mdraid" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="pl en es es_ES" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4 php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, USE_PYTHON

[Comment 1 Andrew John Hughes 2015-02-20 21:44:42 UTC]

Also seeing this when trying to update git and mercurial:

 * Detected file collision(s):
 * 
 * 	/usr/bin/python-exec2
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-python/PyQt5-5.4:0::gentoo
 * 	/usr/bin/python-exec2

[Comment 2 Jeroen Roovers (RETIRED) 2015-02-21 09:42:53 UTC]

*** This bug has been marked as a duplicate of bug 540734 ***