Bug 532132

Summary:	dev-python/logilab-constraint-0.5.0-r1 with dev-python/logilab-common-0.62.1 - file collision in /usr/lib64/python2.7/site-packages/logilab/__init__.py
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	[OLD] Development	Assignee:	Python Gentoo Team <python>
Status:	RESOLVED FIXED
Severity:	normal	CC:	pacho
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---

Description Toralf Förster gentoo-dev

2014-12-10 11:46:23 UTC

* Detected file collision(s):
 * 
 * 	/usr/lib64/python2.7/site-packages/logilab/__init__.py
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-python/logilab-common-0.62.1:0::gentoo
 * 	/usr/lib64/python2.7/site-packages/logilab/__init__.py
 * 
 * Package 'dev-python/logilab-constraint-0.5.0-r1' NOT merged due to
 * file collisions. If necessary, refer to your elog messages for the
 * whole content of the above message.

 * GNU info directory index is up-to-date.

 * IMPORTANT: config file '/etc/ssh/ssh_config' needs updating.
 * See the CONFIGURATION FILES section of the emerge
 * man page to learn how to update config files.



This chroot image is located at a hardened amd64 system.

Portage 2.2.14 (python 2.7.8-final-0, default/linux/amd64/13.0, gcc-4.8.3, glibc-2.20, 3.17.4-hardened-r1 x86_64)
=================================================================
System uname: Linux-3.17.4-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16166892 total,   1741416 free
KiB Swap:   16777212 total,  16765308 free
Timestamp of tree: Sun, 07 Dec 2014 19:15:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.3_p30-r1
dev-lang/perl:            5.20.1-r3
dev-lang/python:          2.7.8, 3.3.5-r1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.6
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.14.1
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.3-r2
sys-devel/make:           4.1-r1
sys-kernel/linux-headers: 3.17-r1 (virtual/os-headers)
sys-libs/glibc:           2.20
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --deep --jobs 1"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.de.gentoo.org/gentoo-portage"
USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mbox mmx modules multilib ncurses nls nptl openmp pam pax_kernel pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

Comment 1 Ian Delaney (RETIRED) gentoo-dev

2014-12-18 13:30:52 UTC

with dev-python/logilab-common-0.61.0 emerged 

~/cvsPortage/gentoo-x86/dev-python/logilab-constraint $ ebuild logilab-constraint-0.5.0-r1.ebuild clean install

yields success

>>> Completed installing logilab-constraint-0.5.0-r1 into /mnt/gen2/TmpDir/portage/dev-python/logilab-constraint-0.5.0-r1/image/

Did not replicate. Also

python_install() {
        # Avoid collisions with dev-python/logilab-common.
        rm -f "${D}$(python_get_sitedir)/logilab/__init__.py" || die
python_install
so possibly this does relate to your system being a hardened system.

While this could better be python_install_all, it works for me.
Needs replication.

Comment 2 Pacho Ramos gentoo-dev

2015-02-28 15:12:30 UTC

+  28 Feb 2015; Pacho Ramos <pacho@gentoo.org>
+  logilab-constraint-0.5.0-r1.ebuild:
+  The colliding file needs to be removed after distutils-r1_python_install
+  (#532132)
+

I was also reproducing it... Ian, were you running a full "emerge" run or only ebuild ... install? To get the collision detection I think that a full emerge is needed :)