Bug 508840 – sci-mathematics/rstudio-0.97.551 - pkg_setup(): .../java-utils-2.eclass: line 294: /usr/bin/depend-java-query: No such file or directory

• Product: Gentoo Linux
• Status: RESOLVED TEST-REQUEST

[Description Walter 2014-04-27 08:49:58 UTC]

Available Java Virtual Machines:
  [1]   icedtea-bin-6  system-vm user-vm
  [2]   oracle-jre-bin-1.7 

/usr/portage/sci-mathematics/rstudio$ sudo emerge --autounmask-write -av =sci-mathematics/rstudio-0.97.551

 * IMPORTANT: 2 news items need reading for repository 'unity-gentoo'.
 * Use eselect news to read news items.


These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N    ~] sci-mathematics/rstudio-0.97.551  USE="-dedicated -server" 0 kB

Total: 1 package (1 new), Size of downloads: 0 kB

Would you like to merge these packages? [Yes/No] ^[[1;3C
Sorry, response '[1;3C' not understood. [Yes/No] 

>>> Verifying ebuild manifests

>>> Emerging (1 of 1) sci-mathematics/rstudio-0.97.551
 * rstudio-0.97.551.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                   [ ok ]
 * gin-1.5.zip SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                               [ ok ]
 * gwt-2.5.0.rc1.zip SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                         [ ok ]
 * core-dictionaries.zip SHA256 SHA512 WHIRLPOOL size ;-) ...                                                                     [ ok ]
/usr/portage/eclass/java-utils-2.eclass: line 294: /usr/bin/depend-java-query: No such file or directory
 * Unable to determine VM for building from dependencies:
NV_DEPEND: >=dev-lang/R-2.11.1
	>=dev-libs/boost-1.50
	dev-libs/mathjax
	dev-libs/openssl
	>=virtual/jre-1.5
	x11-libs/pango
	!dedicated? (
		>=dev-qt/qtcore-4.8:4
		>=dev-qt/qtdbus-4.8:4
		>=dev-qt/qtgui-4.8:4
		>=dev-qt/qtwebkit-4.8:4
		>=dev-qt/qtxmlpatterns-4.8:4
		server? ( virtual/pam )
	)
	dedicated? ( virtual/pam )
	app-arch/unzip
	dev-java/ant-core
	>=virtual/jdk-1.5
	virtual/pkgconfig  sys-devel/make >=dev-util/cmake-2.8.9 userland_GNU? ( >=sys-apps/findutils-4.4.0 ) >=sys-apps/sed-4 >=dev-java/java-config-2.1.9-r1 
 * ERROR: sci-mathematics/rstudio-0.97.551::gentoo failed (setup phase):
 *   Failed to determine VM for building.
 * 
 * Call stack:
 *             ebuild.sh, line   93:  Called pkg_setup
 *             ebuild.sh, line  317:  Called java-pkg-2_pkg_setup
 *     java-pkg-2.eclass, line   53:  Called java-pkg_init
 *   java-utils-2.eclass, line 2065:  Called java-pkg_switch-vm
 *   java-utils-2.eclass, line 2538:  Called die
 * The specific snippet of code:
 *   					die "Failed to determine VM for building."
 * 
 * If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-0.97.551::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-0.97.551::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME=""
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =rstudio-0.97.551
 * The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/temp/die.env'.
 * Working directory: '/usr/lib64/portage/pym'
 * S: '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/work/rstudio-0.97.551'

>>> Failed to emerge sci-mathematics/rstudio-0.97.551, Log file:

>>>  '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/temp/build.log'

 * Messages for package sci-mathematics/rstudio-0.97.551:

 * Unable to determine VM for building from dependencies:
 * ERROR: sci-mathematics/rstudio-0.97.551::gentoo failed (setup phase):
 *   Failed to determine VM for building.
 * 
 * Call stack:
 *             ebuild.sh, line   93:  Called pkg_setup
 *             ebuild.sh, line  317:  Called java-pkg-2_pkg_setup
 *     java-pkg-2.eclass, line   53:  Called java-pkg_init
 *   java-utils-2.eclass, line 2065:  Called java-pkg_switch-vm
 *   java-utils-2.eclass, line 2538:  Called die
 * The specific snippet of code:
 *   					die "Failed to determine VM for building."
 * 
 * If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-0.97.551::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-0.97.551::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/temp/die.env'.
 * Working directory: '/usr/lib64/portage/pym'
 * S: '/var/tmp/portage/sci-mathematics/rstudio-0.97.551/work/rstudio-0.97.551'


Reproducible: Always

Steps to Reproduce:
1. emerge =sci-mathematics/rstudio-0.97.551
Actual Results:  
build fails.

Expected Results:  
build works.

Portage 2.2.8-r1 (default/linux/amd64/13.0, gcc-4.6.3, glibc-2.17, 3.8.8-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.8.8-gentoo-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    32975236 total,   7085580 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Mon, 14 Apr 2014 01:45:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.5-r3, 3.2.5-r3, 3.3.2-r2
dev-util/ccache:          3.1.9
dev-util/cmake:           2.8.12.1-r1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.12.6, 1.13.4
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.7 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo steam-overlay gamerlay rust unity-gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA Intel-SDP AdobeFlash-11.x"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -mno-tls-direct-seg-refs"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -mno-tls-direct-seg-refs"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirrors.163.com/gentoo/ http://gentoo.mirrors.hoobly.com/ http://ftp.lecl.net/pub/gentoo/ ftp://ftp.lecl.net/pub/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/steam /var/lib/layman/gamerlay /var/lib/layman/rust /var/lib/layman/unity-gentoo"
USE="X acl alsa amd64 bash-completion berkdb bindist bzip2 cairo cli colord cracklib crypt cuda cxx dbus dri ffmpeg fortran gdbm gnome gpg gtk hwdb iconv icu ipv6 jack libsamplerate lzma mmx modules multilib ncurses nls nptl opengl openmp pam pcre portaudio pulseaudio readline session speex sse sse2 ssl steamgames_dwarfs tcpd truetype udev unicode vim-syntax xorg zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_GB zh_CN zh th en en_US" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="*" QEMU_USER_TARGETS="*" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="radeon r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

[Comment 1 Jeroen Roovers (RETIRED) 2014-04-27 13:31:46 UTC]

/usr/portage/eclass/java-utils-2.eclass: line 294: /usr/bin/depend-java-query: No such file or directory

rstudio-0.97.551.ebuild inherits java-utils-2.eclass and that sets a dependency (DEPEND) on >=dev-java/java-config-2.1.9-r1 which somehow apparently went horribly wrong, as it should have installed /usr/bin/depend-java-query but didn't, resulting in the above error message (by your build log).

[Comment 2 Julian Ospald 2014-04-27 13:58:36 UTC]

this could actually be a python related issue since /usr/bin/depend-java-query is just a symlink to python-exec

[Comment 3 Patrice Clement (RETIRED) 2015-08-20 22:50:55 UTC]

Give version rstudio-0.98.490-r1 a try and give us a shout. It has been marked stable so I believe there should be no hitch with it.