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Bug 500418

Summary: sci-biology/emboss-6.3.1_p4-r1 - ajax/graphics/.libs/libajaxg.so: undefined reference to `c_plwid'
Product: Gentoo Linux Reporter: Iddo <idoerg>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED CANTFIX    
Severity: normal CC: idoerg
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: /var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/temp/build.log

Description Iddo 2014-02-05 20:12:49 UTC
Created attachment 369644 [details]
/var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/temp/build.log

emerge --info '=sci-biology/emboss-6.3.1_p4-r1::gentoo' here:  
http://pastebin.com/bHAayVZi

emerge -pqv '=sci-biology/emboss-6.3.1_p4-r1::gentoo' here:
http://pastebin.com/JLhge4TP

build log attached
Comment 1 Iddo 2014-02-05 20:15:01 UTC
emerge --info '=sci-biology/emboss-6.3.1_p4-r1::gentoo'

Portage 2.2.8-r1 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.2, glibc-2.18-r1, 3.10.17-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.10.17-gentoo-x86_64-Intel-R-_Core-TM-_i5-2320_CPU_@_3.00GHz-with-gentoo-2.2
KiB Mem:     8169808 total,   3593540 free
KiB Swap:    1048572 total,   1048572 free
Timestamp of tree: Mon, 03 Feb 2014 16:00:01 +0000
ld GNU ld (GNU Binutils) 2.24
app-shells/bash:          4.2_p45-r1
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.6, 3.2.5-r3, 3.3.3
dev-util/cmake:           2.8.12.2
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6, 1.13.4, 1.14.1
sys-devel/binutils:       2.24-r2
sys-devel/gcc:            4.8.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           4.0-r1
sys-kernel/linux-headers: 3.12 (virtual/os-headers)
sys-libs/glibc:           2.18-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--jobs=4 --load-average=3.0"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdparanoia cdr cleartype cli consolekit corefonts cracklib crypt cups cxx dbus declarative doc dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gstreamer gtk iconv ipv6 jpeg jpeg2k kde kipi lcms ldap libnotify mad mjpeg mmx mng modules mp3 mp4 mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf phonon plasma png policykit postscript ppds python qt3support qt4 rar readline sdl semantic-desktop session smpeg spell sse sse2 ssl startup-notification svg symlink tcpd tiff tk truetype udev udisks unicode upower usb v4l v4l2 vorbis wxwidgets x264 xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 python3_3" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.2 3.3"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC
Comment 2 Juergen Rose 2014-03-15 09:46:17 UTC
I think this bug is a dupicate of Bug 493724.