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Bug 489842

Summary: =sci-libs/scipy-0.13.0 - src_test(): error: invalid command 'bdist_egg'
Product: Gentoo Linux Reporter: eroen <erikdenstore+gbugs>
Component: [OLD] DevelopmentAssignee: Gentoo Science Related Packages <sci>
Status: RESOLVED FIXED    
Severity: normal CC: python, tka
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: build.log.xz

Description eroen 2013-10-29 22:53:02 UTC
* python3_2: running distutils-r1_run_phase python_test
/usr/bin/python3.2 setup.py install --home=/var/tmp/portage/sci-libs/scipy-0.13.0/work/scipy-0.13.0-python3_2/build/test --install-lib=/var/tmp/portage/sci-libs/scipy-0.13.0/work/scipy-0.13.0-python3_2/build/test/lib --install-scripts=/var/tmp/portage/sci-libs/scipy-0.13.0/work/scipy-0.13.0-python3_2/build/test/scripts bdist_egg --dist-dir=/var/tmp/portage/sci-libs/scipy-0.13.0/work/scipy-0.13.0-python3_2/build/test config_fc --noopt --noarch
/usr/lib64/python3.2/distutils/dist.py:257: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
   or: setup.py --help [cmd1 cmd2 ...]
   or: setup.py --help-commands
   or: setup.py cmd --help

error: invalid command 'bdist_egg'
 * ERROR: sci-libs/scipy-0.13.0::gentoo failed (test phase):
 *   (no error message)

eroen@falcon ~ $ emerge --info '=sci-libs/scipy-0.13.0::gentoo'
Portage 2.2.7 (default/linux/amd64/13.0, gcc-4.8.1, glibc-2.17, 3.10.7-e6-falcon0+ x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.10.7-e6-falcon0+-x86_64-Intel-R-_Core-TM-2_Quad_CPU_@_2.40GHz-with-gentoo-2.2
KiB Mem:     4038272 total,    575860 free
KiB Swap:    8388604 total,     92544 free
Timestamp of tree: Tue, 29 Oct 2013 16:45:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r4, 3.2.5-r3, 3.3.2-r2
dev-util/ccache:          3.1.9-r3
dev-util/cmake:           2.8.12
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.3
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6, 1.12.6, 1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.5.4, 4.6.4, 4.7.3-r1, 4.8.1-r1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.11 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo gamerlay eroen
ACCEPT_KEYWORDS="amd64 ~amd64 ~x86"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -O2 -pipe"
DISTDIR="/var/distfiles"
EMERGE_DEFAULT_OPTS="--jobs 3 --nospinner --quiet-build --with-bdeps=y --binpkg-respect-use y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="/var/temdist/ /var/distfiles-occam/ http://mirrors.eu.kernel.org/gentoo/ http://mirrors.kernel.org/gentoo/ http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/var/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/gamerlay /var/lib/layman/eroen"
SYNC="rsync://mirrors.eu.kernel.org/gentoo-portage/"
USE="X a52 aac aacs accessibility acl adns alsa amd64 ao atm berkdb bluray bs2b bzip2 cairo calendar canberra caps cdda cdio cdparanoia cdr cli corefonts cracklib crypt css cue cups curl cxx dbus dia dirac djvu dmapi dri dts dvd dvdnav dvi ebook eigen exif faac fam fbcondecor ffmpeg fftw fits flac fontconfig fortran fuse g3dvl gcrypt gd gdbm gif gimp git gmp gnutls gold gstreamer hdri highlight iconv icu id3tag idn imagemagick inotify iptc ipv6 jpeg jpeg2k kde kvm lcms lensfun libnotify loop-aes lqr lzma lzo mad man matroska midi mikmod mkv mms mmx mmxext mng mod modplug modules mp3 mp4 mpeg mpeg2 mpeg4 mpeg4pt2 mplayer mtp mudflap multilib musepack ncurses netlink nfs nls nouveau nptl ocr offensive ogg openal opencl openexr opengl opengtl openmp openvg optimization osmesa pam pango pcre pdf png pnm portaudio postscript pulseaudio qalculate qemu qt3support qt4 rar raw rdesktop readline real rtmp samba scanner schroedinger security session smp sndfile socks5 speex spice sse sse2 sse3 ssl ssse3 strong-optimization svg tbb tcpd theora threads tiff timidity tls truetype udev uml unicode usb usbredir v4l v4l2 vdpau virtualbox vnc vorbis wacom wavpack webp wmf x264 xattr xcb xcomposite xetex xfs xft xine xinerama xorg xps xrandr xv xvid xvmc zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="openssl" DRACUT_MODULES="biosdevname caps crypt crypt-gpg dash dmraid lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="efi-64 pc qemu" INPUT_DEVICES="evdev keyboard mouse synaptics wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver presenter-console presenter-minimizer" LINGUAS="en en_US en_GB nb no nb_NO" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 python3_3" RUBY_TARGETS="ruby20" SANE_BACKENDS="net plustek pnm" USERLAND="GNU" VIDEO_CARDS="nouveau nvidia vesa" XFCE_PLUGINS="menu" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.2 3.3"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

eroen@falcon ~ $ emerge -pqv '=sci-libs/scipy-0.13.0::gentoo'
[ebuild     U ] sci-libs/scipy-0.13.0 [0.12.1] USE="-doc -sparse {-test}" PYTHON_TARGETS="python2_7 python3_2 python3_3 -python2_6"
Comment 1 eroen 2013-10-29 23:19:48 UTC
Created attachment 362276 [details]
build.log.xz
Comment 2 Sébastien Fabbro (RETIRED) gentoo-dev 2013-10-30 17:01:36 UTC
@python: distutils-r1.eclass adds bdist_egg target in distutils_install_for_testing. Do we actually need it?

if "${PYTHON:-python}" setup.py --help bdist_egg &>/dev/null; then                            
       add_args+=(                                                                               
           bdist_egg --dist-dir="${TEST_DIR}"                                                    
       )                                                                                         
fi
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2013-12-02 07:06:43 UTC
(In reply to Sébastien Fabbro from comment #2)
> @python: distutils-r1.eclass adds bdist_egg target in
> distutils_install_for_testing. Do we actually need it?
> 
> if "${PYTHON:-python}" setup.py --help bdist_egg &>/dev/null; then          
> 
>        add_args+=(                                                          
> 
>            bdist_egg --dist-dir="${TEST_DIR}"                               
> 
>        )                                                                    
> 
> fi

@python
please comment here.
Comment 4 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2013-12-02 11:28:27 UTC
(In reply to Sébastien Fabbro from comment #2)
> @python: distutils-r1.eclass adds bdist_egg target in
> distutils_install_for_testing. Do we actually need it?
> 
> if "${PYTHON:-python}" setup.py --help bdist_egg &>/dev/null; then          
> 
>        add_args+=(                                                          
> 
>            bdist_egg --dist-dir="${TEST_DIR}"                               
> 
>        )                                                                    
> 
> fi

That was definitely in order to override --dist-dir. There are two possibilities here:

1. we may modify the function to alter pydistutils.cfg that's used by other functions now,

2. we may find out whether it is really necessary and drop it if it is not.

I'd rather start with 2. I'll try to test it on a few random packages using distutils_install_for_testing.
Comment 5 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2013-12-02 12:24:59 UTC
(In reply to Michał Górny from comment #4)
> That was definitely in order to override --dist-dir. There are two
> possibilities here:
> 
> 1. we may modify the function to alter pydistutils.cfg that's used by other
> functions now,
> 
> 2. we may find out whether it is really necessary and drop it if it is not.
> 
> I'd rather start with 2. I'll try to test it on a few random packages using
> distutils_install_for_testing.

Ok, I can confirm that logilab-common fails without bdist_egg path override. Let's see if it is fine to keep the dist in ${BUILD_DIR}...
Comment 6 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2013-12-02 13:14:30 UTC
+  02 Dec 2013; Michał Górny <mgorny@gentoo.org> distutils-r1.eclass:
+  Override bdist_egg->build_dir via pydistutils.cfg rather than extra command.
+  Fixes bug #489842.

Please try now.
Comment 7 Justin Lecher (RETIRED) gentoo-dev 2013-12-02 14:04:05 UTC
(In reply to Michał Górny from comment #6)
> Please try now.

works now. Thanks for the fix.