Bug 481112 – dev-java/jaxen-1.1.4: Missing dep on jdom-jaxen

• Product: Gentoo Linux
• Status: RESOLVED WORKSFORME

[Description Patrick Lauer 2013-08-15 03:23:16 UTC]

>>> Compiling source in /var/tmp/portage/dev-java/jaxen-1.1.4/work/jaxen-1.1.4 ...
 * Disabling all optional ANT_TASKS
Buildfile: /var/tmp/portage/dev-java/jaxen-1.1.4/work/jaxen-1.1.4/build.xml

get-deps:

compile:
    [mkdir] Created dir: /var/tmp/portage/dev-java/jaxen-1.1.4/work/jaxen-1.1.4/target/classes
    [javac] Compiling 197 source files to /var/tmp/portage/dev-java/jaxen-1.1.4/work/jaxen-1.1.4/target/classes

init:

junit-present:
     [echo] ================================= WARNING ================================
     [echo] Junit isn't present in your ${ANT_HOME}/lib directory. Tests not executed.
     [echo] ==========================================================================

compile-tests:

internal-test:

test:

jar:
      [jar] Building jar: /var/tmp/portage/dev-java/jaxen-1.1.4/work/jaxen-1.1.4/target/jaxen-1.1.4.jar

BUILD SUCCESSFUL
Total time: 2 seconds
>>> Source compiled.
 * Using following ANT_TASKS: ant-junit
!!! ERROR: Package jdom-jaxen-1.0 was not found!
 * ERROR: dev-java/jaxen-1.1.4::gentoo failed (test phase):
 *   java-config --classpath=dom4j-1,jdom-1.0,xom,junit failed

# emerge --search jdom-jaxen
Searching...    
[ Results for search key : jdom-jaxen ]
[ Applications found : 1 ]

*  dev-java/jdom-jaxen
      Latest version available: 1.0-r1
      Latest version installed: [ Not Installed ]

Portage 2.2.0 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.1, glibc-2.17, 3.10.5-gentoo x86_64)
=================================================================
System uname: Linux-3.10.5-gentoo-x86_64-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2
KiB Mem:     7920972 total,   2588152 free
KiB Swap:   25165812 total,  24801024 free
Timestamp of tree: Unknown
ld GNU ld (GNU Binutils) 2.23.2
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r1, 3.3.2-r1
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.8.1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms split-elog strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr egl emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg kde kipi lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp openvg pam pango pcre pdf phonon plasma png policykit ppds qt3support qt4 readline sdl semantic-desktop session spell sqlite sse sse2 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xa xcb xcomposite xinerama xml xscreensaver xv xvfb xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

[Comment 1 Patrick Lauer 2013-08-15 03:26:21 UTC]

FEATURES="-test" emerge -1 jdom-jaxen 

That works - so it's an optional dependency triggered by the test phase?

[Comment 2 Tom Wijsman (TomWij) (RETIRED) 2013-08-15 09:12:30 UTC]

 $ equery d dev-java/jdom-jaxen:1.0
 * These packages depend on jdom-jaxen:
dev-java/jdom-1.0-r4 (~dev-java/jdom-jaxen-1.0)
 $ equery d dev-java/jdom:1.0
 * These packages depend on dev-java/jdom:
dev-java/jaxen-1.1.4 (dev-java/jdom:1.0)
dev-java/jdom-jaxen-1.0-r1 (~dev-java/jdom-1.0)
dev-java/saxon-9.2.0.6 (dev-java/jdom:1.0)
 $ . jaxen/jaxen-1.1.4.ebuild ; echo DEPEND: ${DEPEND} ; echo RDEPEND: ${RDEPEND}
-bash: inherit: command not found
DEPEND: >=virtual/jdk-1.4 test? ( dev-java/ant-junit:0 ) dev-java/dom4j:1 dev-java/jdom:1.0 dev-java/xom:0
RDEPEND: >=virtual/jre-1.4 dev-java/dom4j:1 dev-java/jdom:1.0 dev-java/xom:0
 $ . jdom/jdom-1.0-r2.ebuild ; echo PDEPEND: ${PDEPEND}
-bash: inherit: command not found
PDEPEND: ~dev-java/jdom-jaxen-

Tricky situation; jaxen should pull in jdom, and jdom on its own turn should pull in jdom-jaxen. But, because it is a PDEPEND, jdom can possibly be merged after jdom-jaxen; so, appears we do need to add a dependency to avoid this on all its reverse dependencies despite the package not really using it. The other option is to rewrite PMs to merge PDEPENDs before merging reverse dependencies...

It might be the case that PDEPENDs already merge before reverse dependencies; if that is the case, your Portage tree is broken. Which appears to be the case, since you don't have the package installed; but well, just to make it work despite a broken dep tree I will add it explicitly.

+  15 Aug 2013; Tom Wijsman <[e-mail]> +jaxen-1.1.4-r1.ebuild:
+  Revision bump. dev-java/jdom-jaxen:1.0 added as a common dependency because
+  dev-java/jdom:1.0 needs it, fixes bug #481112 reported by Patrick Lauer
+  (bonsaikitten).

[Comment 3 Ted Tanberry 2013-08-22 08:36:17 UTC]

I'm trying to install sci-biology/beast-mcmc-1.7.5 which depends on dev-java/jdom-jaxen and now get

[ebuild  N     ] sci-biology/beast-mcmc-1.7.5  39,567 kB
[nomerge       ]  dev-java/jdom-jaxen-1.0-r1:1.0 
[ebuild  N     ]   dev-java/jaxen-1.1.4-r1:1.1  USE="-doc -examples -source {-test}" 0 kB
[ebuild  N     ]    dev-java/jdom-jaxen-1.0-r1:1.0  0 kB

[Comment 4 Tom Wijsman (TomWij) (RETIRED) 2013-08-30 07:49:34 UTC]

This results in bug #482750.

+  30 Aug 2013; Tom Wijsman <[e-mail]> -jaxen-1.1.4-r1.ebuild:
+  Remove revision bump which causes a circular dependency as seen in bug
+  #482750, bug reported by Camaron and Ted Tanberry; this revision bump was
+  introduced for bug #481112 where the dependency should be indirectly installed
+  because it is a dependency of the jdom dependency.