Bug 470948 – dev-python/h5py-2.1.3 fails tests with python-3.3

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Patrick Lauer 2013-05-22 06:18:05 UTC]

>>> Source compiled.
 * python3_3: running distutils-r1_run_phase python_test
 * python2_7: running distutils-r1_run_phase python_test
..........
----------------------------------------------------------------------
Ran 10 tests in 0.002s

OK
E
======================================================================
ERROR: Failure: ImportError (No module named '_conv')
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3.3/site-packages/nose/failure.py", line 38, in runTest
    raise self.exc_val.with_traceback(self.tb)
  File "/usr/lib/python3.3/site-packages/nose/loader.py", line 413, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python3.3/site-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python3.3/site-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python3.3/imp.py", line 171, in load_module
    return load_package(name, filename)
  File "/usr/lib/python3.3/imp.py", line 145, in load_package
    return _bootstrap.SourceFileLoader(name, path).load_module(name)
  File "<frozen importlib._bootstrap>", line 586, in _check_name_wrapper
  File "<frozen importlib._bootstrap>", line 1023, in load_module
  File "<frozen importlib._bootstrap>", line 1004, in load_module
  File "<frozen importlib._bootstrap>", line 562, in module_for_loader_wrapper
  File "<frozen importlib._bootstrap>", line 869, in _load_module
  File "<frozen importlib._bootstrap>", line 313, in _call_with_frames_removed
  File "/var/tmp/portage/dev-python/h5py-2.1.3/work/h5py-2.1.3-python3_3/lib/h5py/__init__.py", line 7, in <module>
    from h5py import h5a, h5d, h5ds, h5f, h5fd, h5g, h5r, h5s, h5t, h5p, h5z
  File "h5t.pxd", line 17, in init h5py.h5a (h5py/h5a.c:5499)
  File "h5t.pyx", line 29, in init h5py.h5t (h5py/h5t.c:16853)
ImportError: No module named '_conv'

----------------------------------------------------------------------
Ran 1 test in 0.001s

FAILED (errors=1)
 * ERROR: dev-python/h5py-2.1.3 failed (test phase):

Portage 2.1.11.60 (default/linux/x86/13.0, gcc-4.7.2, glibc-2.17, 3.9.0-gentoo i686)
=================================================================
System uname: Linux-3.9.0-gentoo-i686-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2
KiB Mem:     7921124 total,   1369372 free
KiB Swap:   25165812 total,  25152996 free
Timestamp of tree: Unknown
ld GNU ld (GNU Binutils) 2.23.1
app-shells/bash:          4.2_p45
dev-lang/python:          2.7.3-r3, 3.2.3-r2, 3.3.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.12.6, 1.13.1
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.7.2-r1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm gpm iconv ipv6 modules mudflap ncurses nls nptl openmp pam pcre readline session sqlite ssl tcpd unicode x86 zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python3.3" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7 3.3"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Kacper Kowalik (Xarthisius) (RETIRED) 2015-01-14 22:02:25 UTC]

No longer in tree, current version (2.4.0) passes tests with 2.7 and 3.4