Bug 459726 – sci-biology/ncbi-tools does not respect LDFLAGS

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Agostino Sarubbo 2013-02-28 15:22:56 UTC]

You receive this bug because this package does not respect my system's LDFLAGS


 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/entrcmd
 * /usr/bin/sbtedit
 * /usr/bin/asn2gb
 * /usr/bin/fa2htgs
 * /usr/bin/seqtest
 * /usr/bin/gene2xml
 * /usr/bin/formatdb
 * /usr/bin/checksub
 * /usr/bin/asntool
 * /usr/bin/demo_regexp
 * /usr/bin/asn2xml
 * /usr/bin/demo_regexp_grep
 * /usr/bin/testcore
 * /usr/bin/cdscan-ncbi
 * /usr/bin/impala
 * /usr/bin/testval
 * /usr/bin/asn2ff
 * /usr/bin/megablast
 * /usr/bin/Nentrez
 * /usr/bin/blastpgp
 * /usr/bin/blastall
 * /usr/bin/asn2idx
 * /usr/bin/getmesh
 * /usr/bin/vecscreen
 * /usr/bin/gil2bin
 * /usr/bin/tbl2asn
 * /usr/bin/blastcl3
 * /usr/bin/debruijn
 * /usr/bin/seedtop
 * /usr/bin/Psequin
 * /usr/bin/fastacmd
 * /usr/bin/makemat
 * /usr/bin/entrez2
 * /usr/bin/testobj
 * /usr/bin/dosimple
 * /usr/bin/bl2seq
 * /usr/bin/makeset
 * /usr/bin/idfetch
 * /usr/bin/getpub
 * /usr/bin/errhdr
 * /usr/bin/test_regexp
 * /usr/bin/taxblast
 * /usr/bin/copymat
 * /usr/bin/udv
 * /usr/bin/asn2asn
 * /usr/bin/ddv
 * /usr/bin/blastclust
 * /usr/bin/ncbisort
 * /usr/bin/asndhuff
 * /usr/bin/asn2all
 * /usr/bin/findspl
 * /usr/bin/indexpub
 * /usr/bin/formatrpsdb
 * /usr/bin/rpsblast

[Comment 1 Agostino Sarubbo 2013-02-28 15:27:27 UTC]

Created attachment 340508 [details]
build log

[Comment 2 Justin Lecher (RETIRED) 2013-03-01 09:15:19 UTC]

+*ncbi-tools-2.2.26-r1 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <[e-mail]> +ncbi-tools-2.2.26-r1.ebuild:
+  Clean heuristic to fix build env, #459720 and #459726
+


Please retry with revision 1 and reopen if still exists.

[Comment 3 Agostino Sarubbo 2013-03-01 14:28:26 UTC]

it still happens on ppc64

[Comment 4 Justin Lecher (RETIRED) 2013-03-01 14:37:45 UTC]

could I get the latest build.log?

[Comment 5 Agostino Sarubbo 2013-03-01 14:46:08 UTC]

Created attachment 340638 [details]
build log

[Comment 6 Justin Lecher (RETIRED) 2013-03-01 14:53:28 UTC]

+*ncbi-tools-2.2.26-r2 (01 Mar 2013)
+
+  01 Mar 2013; Justin Lecher <[e-mail]> -ncbi-tools-2.2.26-r1.ebuild,
+  +ncbi-tools-2.2.26-r2.ebuild:
+  Fix all config files, #459720, #459726, #459878
+


Please test and reopen if needed