Bug 459038 – sys-apps/portage-2.1.11.52: preserve-libs does not work for libs that are dynamically removed from the ld.so search path by tools like binutils-config and gcc-config

• Product: Portage Development
• Status: CONFIRMED ---

[Description Pacho Ramos 2013-02-24 16:33:45 UTC]

# emerge @preserved-rebuild
emerge: 'preserved-rebuild' is an empty set
emerge: no targets left after set expansion

But:
# revdep-rebuild -p
 * Configuring search environment for revdep-rebuild

 * Checking reverse dependencies
 * Packages containing binaries and libraries broken by a package update
 * will be emerged.

 * Collecting system binaries and libraries
 * Found existing 1_files.rr
 * Collecting complete LD_LIBRARY_PATH
 * Found existing 2_ldpath.rr.
 * Checking dynamic linking consistency
[ 19% ]  *   broken /usr/bin/pdftk (requires libgcj.so.11)
[ 100% ]                 
 * Generated new 3_broken.rr
 * Assigning files to packages
 *   /usr/bin/pdftk -> app-text/pdftk
 * Generated new 4_raw.rr and 4_owners.rr
 * Cleaning list of packages to rebuild
 * Generated new 4_pkgs.rr
 * Assigning packages to ebuilds
 * Generated new 4_ebuilds.rr
 * Evaluating package order
 * Generated new 5_order.rr
 * All prepared. Starting rebuild
emerge --complete-graph=y --oneshot --quiet-build=n --autounmask-write --pretend app-text/pdftk:0

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R    ] app-text/pdftk-1.44 
 * Now you can remove -p (or --pretend) from arguments and re-run revdep-rebuild.


Reproducible: Always




 emerge --info
Portage 2.1.11.52 (default/linux/amd64/13.0/desktop/gnome, gcc-4.6.3, glibc-2.15-r3, 3.7.7-gentoo x86_64)
=================================================================
System uname: Linux-3.7.7-gentoo-x86_64-Intel-R-_Core-TM-_i5-2410M_CPU_@_2.30GHz-with-gentoo-2.1
KiB Mem:     6008344 total,    280936 free
KiB Swap:    5140476 total,   4592892 free
Timestamp of tree: Sat, 23 Feb 2013 19:30:01 +0000
ld GNU ld (GNU Binutils) 2.22
ccache version 3.1.9 [enabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.3-r2, 3.2.3
dev-util/ccache:          3.1.9
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.6 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo bumblebee x11 x-portage
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=native"
DISTDIR="/usr/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=n --autounmask-write"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs ccache config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms sign split-log strict test test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.ovh.net/gentoo-distfiles/ http://ftp.heanet.ie/pub/gentoo/"
LANG="es_ES.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j5"
PKGDIR="/usr/local/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/bumblebee /usr/portage/local/layman/x11 /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 applet bash-completion berkdb bluetooth branding bzip2 cairo cdda cddb cdr cli colord consolekit cracklib crypt cups cvs cxx dbus djvu dri dts dvd dvdr dvi eds emboss enchant encode evo exif fam fat ffmpeg firefox flac fortran fuse gdbm gif gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk3 gtkstyle http iconv jpeg kpathsea latex lcms ldap libnotify libvisual lyx mad mms mmx mmxext mng modules mono monolithic-build mp3 mp4 mpeg mudflap multilib musicbrainz nautilus ncurses network-cron networkmanager nls nptl ntfs ntp numa nvidia ogg opengl openmp optimized-qmake pam pango pch pdf png policykit ppds pulseaudio qt3support readline reiserfs scanner sdl session smp sna socialweb spell sse sse2 sse3 ssl ssse3 startup-notification svg t1lib tcpd test theora threads tiff truetype udev udisks unicode upnp-av upower usb v4l vaapi vala vcd vdpau vorbis wifi wxwidgets x264 xcb xfs xml xv xvid youtube zlib" ABI_X86="64" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="es es_ES en_US" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="fbdev nvidia vesa intel i915 i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Pacho Ramos 2013-02-24 16:54:07 UTC]

http://dev.gentoo.org/~pacho/pkg.tar.xz

/var/db/pkg contents (file is too big for being attached)

[Comment 2 Zac Medico 2013-02-24 18:05:07 UTC]

(In reply to comment #0)
> [ 19% ]  *   broken /usr/bin/pdftk (requires libgcj.so.11)

The issue is that gcc-config dynamically removes the path of the library from ld.so.conf. We can handle this by copying the library to a special directory for preservation, as discussed in bug #364557.

[Comment 3 Pacho Ramos 2013-02-24 18:08:15 UTC]

OK thanks, can I run revdep-rebuild now or will you still need some info from "broken" setup?

[Comment 4 Zac Medico 2013-02-24 18:23:49 UTC]

No more info is needed.

[Comment 5 Zac Medico 2013-07-13 21:29:42 UTC]

*** Bug 476742 has been marked as a duplicate of this bug. ***

[Comment 6 Zac Medico 2013-08-16 19:34:57 UTC]

*** Bug 481138 has been marked as a duplicate of this bug. ***

[Comment 7 Zac Medico 2014-11-01 09:05:38 UTC]

*** Bug 495238 has been marked as a duplicate of this bug. ***

[Comment 8 Zac Medico 2018-06-24 20:19:16 UTC]

*** Bug 658906 has been marked as a duplicate of this bug. ***

[Comment 9 Zac Medico 2019-03-21 14:15:47 UTC]

*** Bug 681148 has been marked as a duplicate of this bug. ***