Bug 455758 – app-portage/deltup-0.4.5: fails to build

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Diego Elio Pettenò (RETIRED) 2013-02-05 22:06:19 UTC]

https://tinderboxlogs.s3.amazonaws.com/tbamd64.excelsior.flameeyes.eu/app-portage%3Adeltup-0.4.5%3A20130205-215233.html

Portage 2.2.0_alpha149 (default/linux/amd64/10.0, gcc-4.7.2-asneeded, glibc-2.17, 3.5.4-hardened-r1 x86_64)
=================================================================
System uname: Linux-3.5.4-hardened-r1-x86_64-AMD_Opteron-TM-_Processor_6272-with-gentoo-2.2
Timestamp of tree: Sun, 30 Dec 2012 00:00:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
app-shells/bash:          4.2_p39-r1
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.3-r3, 3.2.3-r2
dev-util/cmake:           2.8.10.2
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.7.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.7 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo tbamd64
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="${EPREFIX}/etc/gconf /etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches"
DISTDIR="/var/cache/portage/distfiles"
FCFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict test test-fail-continue unknown-features-warn unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches"
GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://gentoo.mirrors.hoobly.com/ http://gentoo.llarian.net/"
LANG="en_US.utf8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j24"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/tmp"
PORTDIR="/var/cache/tinderbox/tree"
PORTDIR_OVERLAY="/root/overlay"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowex acl amd64 berkdb bzip2 cli cracklib crypt cups cxx doc dri emacs ffmpeg fortran gnutls gpm iconv icu intl introspection ipv6 mmx modules mudflap multilib ncurses nls nptl openmp pam pax_kernel pcre pdf plasma pppd qt3support readline semantic-desktop session snmp sse sse2 sse3 sse4 ssl ssse3 tcmalloc tcpd udev unicode vhosts zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Theofilos Intzoglou 2013-03-06 21:34:25 UTC]

Could it be that the patch file 'deltup-0.4.4-asneeded.patch' needs to be applied to the 0.4.5 version of deltup too?

[Comment 2 James Cloos 2013-07-16 13:21:48 UTC]

0.4.5-r1 fails here, with gcc-4.8, with:

g++ bpatch.o bzip2.o file.o system.o tmpstore.o deltup.o  -pipe -O3 -g3 -march=native -fno-inline-functions -floop-interchange -floop-strip-mine -floop-block -o deltup -lstdc++ -lz -lbz2 -lssl
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.1/../../../../x86_64-pc-linux-gnu/bin/ld: deltup.o: undefined reference to symbol 'MD5_Init'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.1/../../../../x86_64-pc-linux-gnu/bin/ld: note: 'MD5_Init' is defined in DSO /usr/lib64/libcrypto.so.1.0.0 so try adding it to the linker command line
/usr/lib64/libcrypto.so.1.0.0: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make: *** [deltup] Error 1
 * ERROR: app-portage/deltup-0.4.5-r1 failed (compile phase):

which suggests that the existing deltup-0.4.4-asneeded.patch is needed.

[Comment 3 Andrew Savchenko 2013-08-21 03:59:24 UTC]

Created attachment 356564 [details, diff]
deltup-0.4.5-asneeded.patch

deltup-0.4.4-asneeded.patch doesn't apply for 0.4.5, so here is a new one.
With this patch deltup-0.4.5-r1 builds fine.

[Comment 4 eroen 2013-09-26 10:39:36 UTC]

I can confirm that deltup-0.4.5 fails to build as it is in Gentoo, and the patch in comment #3 solves this.

It would be nice if someone would apply the patch soon, especially since it is a very small change.

It would also be nice if the ebuild was modified to add epatch_user support so that users needing to work around issues like this (for months!) in the future don't have to either fork the ebuild or do bashrc hackery.

[Comment 5 Pacho Ramos 2013-10-13 14:17:41 UTC]

+  13 Oct 2013; Pacho Ramos <[e-mail]>
+  +files/deltup-0.4.5-underlink.patch, deltup-0.4.5-r1.ebuild:
+  Fix underlinking bug 455758
+