Bug 437516 – dev-python/beautifulsoup file collisions

• Product: Gentoo Linux
• Status: RESOLVED INVALID

[Description Theo Chatzimichos (RETIRED) 2012-10-07 13:17:49 UTC]

Created attachment 325910 [details]
build.log

Portage 2.2.0_alpha135 (default/linux/amd64/10.0/desktop/kde, gcc-4.6.3, glibc-2.15-r3, 2.6.39-gentoo-r4 x86_64)
=================================================================
System uname: Linux-2.6.39-gentoo-r4-x86_64-Intel-R-_Core-TM-2_Duo_CPU_P8400_@_2.26GHz-with-gentoo-2.2
Timestamp of tree: Unknown
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12
dev-lang/python:          2.7.3-r2, 3.2.3-r1
dev-util/cmake:           2.8.9-r1
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.10.5
sys-apps/sandbox:         2.6
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6, 1.12.4
sys-devel/binutils:       2.22.90
sys-devel/gcc:            4.5.3-r2, 4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.6 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo improvise gentoo-el
Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe -ggdb"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo"
CXXFLAGS="-march=core2 -O2 -pipe -ggdb"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --quiet-build=n"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg candy config-protect-if-modified distlocks ebuild-locks fixlafiles news parallel-fetch preserve-libs protect-owned sandbox sfperms sign splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.cc.uoc.gr/mirrors/linux/gentoo/ http://ftp.ntua.gr/pub/linux/gentoo/ http://distfiles.gentoo.org/"
LANG="en_US.utf8"
LC_ALL="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en el"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages/core2duo"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/home/tampakrap/Source_Code/gentoo/gentoo-x86"
PORTDIR_OVERLAY="/var/lib/layman/improvise /var/lib/layman/gentoo-el"
SYNC="cvs://[e-mail]:/var/cvsroot"
USE="64bit X X509 a52 aac aalib acl acpi addressbook akonadi alsa amd64 amr apache2 asf assistant attica bash-completion berkdb bluetooth branding bzip2 cdda cddb cdparanoia cdr chm cli clucene consolekit cpudetection cracklib crypt cups curl cvs cxx dbus declarative directfb dmx dri dts dv dvd dvdr editor emboss encode exif fam fbcon ffmpeg firefox flac fontconfig fortran gd gdbm gif gimp git gnutls gphoto2 gpm graphviz handbook hddtemp iconv idn ieee1394 imagemagick ipod java joystick jpeg jpeg2k kate kde kipi lame laptop lastfm lcms ldap lm_sensors lzma mad matroska mjpeg mmx mmxext mng modules mp3 mp4 mpeg mplayer mudflap multilib multimedia musepack mysql mysqli nas ncurses network networkmanager nfs nls npp nptl ntps ogg okteta okular openexr opengl openldap openmp pam pango pcre pdf perl phonon php plasma png policykit ppds pppd private-headers python qalculate qimageblitz qscintilla qt qt3support qt4 qthelp quicktime qwt rar raster rdesktop readline reports rpc rss ruby samba sasl scanner sdl semantic-desktop sensord session sftp smp snmp solver speex spell sql sqlite srt sse sse2 sse3 sse4 ssl ssse3 startup-notification subtitles subversion svg tcpd theora threads thumbnail tiff truetype udev udisks unicode upower usb v4l v4l2 vcd vdpau vdr vhosts vim-syntax vlc vorbis webkit wifi wma x264 xcb xcomposite xinerama xml xmlpatterns xpm xscreensaver xv xvid xvmc yv12 zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en el" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Mike Gilbert 2012-10-07 14:06:56 UTC]

Package:    dev-python/beautifulsoup-4.1.3
...

Searching all installed packages for file collisions...

Press Ctrl-C to Stop

dev-python/beautifulsoup-4.0.4


Something seems to be wrong with your package mangler if it can't complete a package upgrade successfully.

[Comment 2 Theo Chatzimichos (RETIRED) 2012-10-07 15:11:04 UTC]

% emerge -pv beautifulsoup

These are the packages that would be merged, in order:

Calculating dependencies                  ... done!           
[ebuild  NS    ] dev-python/beautifulsoup-4.1.3 [4.0.4] USE="-doc {-test}" 0 kB

Total: 1 package (1 in new slot), Size of downloads: 0 kB


Maybe that's the issue?

[Comment 3 Mike Gilbert 2012-10-07 15:21:33 UTC]

Yeah, that's weird. Both versions should have SLOT=4.

What does /var/db/pkg/dev-python/beautifulsoup-4.0.4/SLOT contain?

[Comment 4 Theo Chatzimichos (RETIRED) 2012-10-07 15:43:13 UTC]

bingo, it says python-2. if it never had python-2 slot in tree, then probably my ebuild is from idella's overlay and portage silently messed up while moving metadata in /var/db/pkg. feel free to invalidate it

[Comment 5 Zac Medico 2012-10-07 22:05:18 UTC]

Here's a patch to make portage show the slot and repo of the colliding package:

http://git.overlays.gentoo.org/gitweb/?p=proj/portage.git;a=commit;h=83577043ac769db95e490ef180de14d01072f13a