Bug 423615 – sci-geosciences/grass-6.4.2: fails to build (gcc 4.7?)

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Diego Elio Pettenò (RETIRED) 2012-06-26 09:59:40 UTC]

Portage 2.2.0_alpha112 (default/linux/amd64/10.0, gcc-4.7.1-asneeded, glibc-2.15-r2, 3.4.3-hardened x86_64)
=================================================================
System uname: Linux-3.4.3-hardened-x86_64-AMD_Opteron-TM-_Processor_6272-with-gentoo-2.1
Timestamp of tree: Sun, 24 Jun 2012 17:30:02 +0000
ccache version 3.1.7 [disabled]
app-shells/bash:          4.2_p29
dev-java/java-config:     2.1.12
dev-lang/python:          2.6.8, 2.7.3-r2, 3.2.3-r1
dev-util/ccache:          3.1.7
dev-util/cmake:           2.8.8-r3
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.10.3
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.4_p6-r1, 1.9.6-r3, 1.10.3, 1.11.5, 1.12.1
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.3-r2, 4.7.1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.4 (virtual/os-headers)
sys-libs/glibc:           2.15-r2
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ggdb -march=native -ftracer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /opt/openjms/config /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/qpsmtpd/plugins /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -ggdb -march=native -ftracer"
DISTDIR="/var/cache/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles news parallel-fetch parse-eapi-ebuild-head protect-owned sandbox sfperms strict test test-fail-continue unknown-features-warn unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j24"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/tmp"
PORTDIR="/var/cache/portage/tree"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowex acl amd64 berkdb bzip2 cli cracklib crypt cups cxx dri ffmpeg fortran gdbm gnutls gpm iconv ipv6 mmx modules mudflap multilib ncurses nls nptl openmp pam pax_kernel pcre plasma pppd qt3support readline semantic-desktop session sse sse2 sse3 sse4 ssl ssse3 tcpd unicode vhosts xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18 ruby19 ree18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Paweł Rumian 2012-08-07 17:06:28 UTC]

I can confirm I have exactly the same error, and I am also on gcc-4.7.

# emerge -pqv grass
[ebuild  N    ] sci-geosciences/grass-6.4.2  USE="X cairo cxx jpeg nls opengl png python readline tiff truetype -debug -ffmpeg -fftw -gmath -motif -mysql -odbc -postgres -sqlite -wxwidgets" 

# emerge --info
Portage 2.2.0_alpha120 (default/linux/amd64/10.0/desktop, gcc-4.7.1, glibc-2.15-r2, 3.5.0-gentoo x86_64)
=================================================================
System uname: Linux-3.5.0-gentoo-x86_64-AMD_Athlon-tm-_II_X3_450_Processor-with-gentoo-2.1
Timestamp of tree: Tue, 07 Aug 2012 12:30:01 +0000
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12
dev-lang/python:          2.7.3-r2, 3.2.3-r1
dev-util/cmake:           2.8.8-r3
dev-util/pkgconfig:       0.27
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.10.5
sys-apps/sandbox:         2.6
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.2
sys-devel/binutils:       2.22.90
sys-devel/gcc:            4.7.1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.5 (virtual/os-headers)
sys-libs/glibc:           2.15-r2
Repositories: gentoo local-repo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles news parallel-fetch parse-eapi-ebuild-head preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="pl_PL.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="pl"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X a52 aac acpi alsa amd64 bash-completion bluetooth branding bzip2 cairo cdda cdr cli cracklib crypt cups cxx dri dts dvd dvdr emboss encode exif fam firefox flac fortran gif gnutls gpm gtk iconv ipv6 jpeg lapack lcms mad mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf png ppds pppd python readline session smp spell sse sse2 ssl startup-notification svg tcpd threads tiff truetype udev udisks unicode upower usb vdpau vorbis x264 xcb xml xmp xv xvid zlib" ALSA_CARDS="emu10k1" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="directory" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="pl" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="radeon r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 2 cmuelle8 2013-04-19 15:12:04 UTC]

*** Bug 466386 has been marked as a duplicate of this bug. ***

[Comment 3 cmuelle8 2013-04-19 15:12:26 UTC]

Fixable with the version bump in #466388

[Comment 4 Christian Schmitt 2013-06-02 11:17:55 UTC]

Also fixable with the patch posted in bug 466628

[Comment 5 Stoian Ivanov 2013-11-20 14:28:53 UTC]

Created attachment 363656 [details, diff]
Builds here ... YMMV

Retrofitted from upstream track

[Comment 6 Sam Jorna (wraeth) (RETIRED) 2015-10-19 11:19:46 UTC]

Closing as OBSOLETE - sci-geosciences/grass-7.0.1 has been added to the tree as per bug 514514 and subsequently revbumped. Note that sci-geosciences/grass:6 has been masked and will be removed from the tree in the coming weeks.