Bug 407387 – media-libs/mesa - /usr/lib/libOSMesa.so: undefined reference to `_glapi_tls_Dispatch'

• Product: Gentoo Linux
• Status: RESOLVED DUPLICATE

[Description Helmut Jarausch 2012-03-08 08:55:21 UTC]

Created attachment 304605 [details]
build log

emerging sci-visualization/gfsview-20111003 fails due to
/usr/lib/libOSMesa.so: undefined reference to `_glapi_tls_Dispatch'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_tls_Context'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_check_multithread'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_set_context'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_add_dispatch'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_get_proc_address'
/usr/lib/libOSMesa.so: undefined reference to `_glapi_get_context'

this is with mesa-8.0.1-r2

emerge --info sci-visualization/gfsview
Portage 2.2.0_alpha90 (default/linux/amd64/10.0/desktop, gcc-4.6.2, glibc-2.14.1-r2, 3.3.0-rc6 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.3.0-rc6-x86_64-AMD_Phenom-tm-_II_X4_940_Processor-with-gentoo-2.1
Timestamp of tree: Thu, 08 Mar 2012 05:45:01 +0000
ccache version 3.1.7 [disabled]
app-shells/bash:          4.2_p20
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.2.2
dev-util/ccache:          3.1.7
dev-util/cmake:           2.8.7-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.9.2
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.3
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.3-r2, 4.6.2, 4.7.0_pre9999::local, 4.8.0_alpha20120302::local
sys-devel/gcc-config:     1.5.1
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.2-r1 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r2
Repositories: gentoo sunrise local
Installed sets: 
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-mtune=native -O2 -msse3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/neatx/home"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-mtune=native -O2 -msse3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs buildpkg distlocks ebuild-locks fixlafiles news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo "
LANG="en_US.iso88591"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en de"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage"
USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 atm avahi berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg fftw firefox flac fortran fuse gdbm gdu gfortran gif gimp gnome gpm gtk gtk2 iconv ipv6 jpeg kde lapack lcms libnotify mad mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppds pppd qt qt3support qt4 readline sdl session smp spell sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg sysfs tcl tcpd threads tiff tk truetype udev unicode usb vorbis x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="ati radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

sci-visualization/gfsview-20100407 was built with the following:
USE="(multilib)"

[Comment 1 Richard Grenville 2012-03-08 12:33:23 UTC]

Maybe turning off the "osmesa" USE flag of media-libs/mesa would help?

[Comment 2 Helmut Jarausch 2012-03-08 13:55:14 UTC]

(In reply to comment #1)
> Maybe turning off the "osmesa" USE flag of media-libs/mesa would help?

Do you mean to rebuild mesa without this flag ?
What consequences would that have.

Just doing 

USE=-osmesa emerge sci-visualization/gfsview
doesn't work.

Helmut.

[Comment 3 Jeroen Roovers (RETIRED) 2012-03-08 14:56:06 UTC]

(In reply to comment #2)
> (In reply to comment #1)
> > Maybe turning off the "osmesa" USE flag of media-libs/mesa would help?
> 
> Do you mean to rebuild mesa without this flag ?
> What consequences would that have.
> 
> Just doing 
> 
> USE=-osmesa emerge sci-visualization/gfsview

That's not what he asked.

Could you (revdep-)rebuild media-libs/mesa, please, and see if emerging gfsview then works?
> doesn't work.
> 
> Helmut.

[Comment 4 Helmut Jarausch 2012-03-08 17:07:31 UTC]

(In reply to comment #3)
> (In reply to comment #2)
> > (In reply to comment #1)
> > > Maybe turning off the "osmesa" USE flag of media-libs/mesa would help?
> > 
> > Do you mean to rebuild mesa without this flag ?
> > What consequences would that have.
> > 
> > Just doing 
> > 
> > USE=-osmesa emerge sci-visualization/gfsview
> 
> That's not what he asked.
> 
> Could you (revdep-)rebuild media-libs/mesa, please, and see if emerging
> gfsview then works?
> > doesn't work.
> > 
> > Helmut.

No it doesn't help unfortunately.
This missing symbols are all in /usr/lib64/libglapi.so .
Either gfsview should like against this or prelinking of 
/usr/lib/libOSMesa.so against this is broken.

Furthermore, I believe not using mesa, since

eselect opengl list
gives
Available OpenGL implementations:
  [1]   ati *
  [2]   xorg-x11

[Comment 5 Richard Grenville 2012-03-09 06:44:18 UTC]

I did not notice sci-visualization/gfsview depends on mesa[osmesa], silly me. :-)

I emerged sci-visualization/gfsview myself but could not reproduce the problem. I even compared my build log with yours and noticed nothing interesting.

The ebuild sci-visualization/gfsview should add another USE flag 'mpi', since internally gfsview does have a switch to turn on/off mpi support. sci-visualization/gfsview[mpi] probably should depend on virtual/mpi.

As a last resort you could try building gfsview without MPI and blank MAKEOPTS. I guess it won't help, though:
  EXTRA_ECONF="--disable-mpi" MAKEOPTS="" emerge gfsview

You may also try building the latest snapshot on its official website.

[Comment 6 Helmut Jarausch 2012-03-09 10:53:35 UTC]

(In reply to comment #5)
> I did not notice sci-visualization/gfsview depends on mesa[osmesa], silly
> me. :-)
> 
> I emerged sci-visualization/gfsview myself but could not reproduce the
> problem. I even compared my build log with yours and noticed nothing
> interesting.
> 
> The ebuild sci-visualization/gfsview should add another USE flag 'mpi',
> since internally gfsview does have a switch to turn on/off mpi support.
> sci-visualization/gfsview[mpi] probably should depend on virtual/mpi.
> 
> As a last resort you could try building gfsview without MPI and blank
> MAKEOPTS. I guess it won't help, though:
>   EXTRA_ECONF="--disable-mpi" MAKEOPTS="" emerge gfsview

Unfortunately, this doesn/t change anything.

> You may also try building the latest snapshot on its official website.

I've tried , e.g. gerris-20120301 and gfsview-120229
gerris builds fine but gfsview now has a different problem:

gfsgl.c: In function 'gfs_gl_var_func_set':
gfsgl.c:1776:26: error: 'GfsSimulation' has no member named 'deferred_compilation'
gfsgl.c:1779:6: error: 'GfsSimulation' has no member named 'deferred_compilation'

So, I give up for the moment.

[Comment 7 Matt Turner 2012-03-09 15:12:56 UTC]

Marking as a duplicate of 399813. I suggested something to test in the other bug, but no one has responded. Please give that a try.

*** This bug has been marked as a duplicate of bug 399813 ***