Bug 405867 – sci-chemistry/ccp4i-6.1.3-r3 fails postinst phase

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Patrick Lauer 2012-02-26 09:46:56 UTC]

>>> /usr/bin/ccp4i -> ../lib64/ccp4/ccp4i/bin/ccp4i
 * Scanning for an open DISPLAY to start Xvfb ...
 * Starting Xvfb on $DISPLAY=1 ...
/usr/bin/ccp4i: line 4: /bltwish: No such file or directory
 * ERROR: sci-chemistry/ccp4i-6.1.3-r3 failed (postinst phase):
 *   virtualmake: the _ccp4-setup failed.
 * 
 * Call stack:
 *     ebuild.sh, line   85:  Called pkg_postinst
 *   environment, line 2766:  Called virtualmake
 *   environment, line 5426:  Called die
 * The specific snippet of code:
 *       [[ ${retval} -ne 0 ]] && die "${FUNCNAME}: the ${VIRTUALX_COMMAND} failed.";
 * 
 * If you need support, post the output of 'emerge --info =sci-chemistry/ccp4i-6.1.3-r3',
 * the complete build log and the output of 'emerge -pqv =sci-chemistry/ccp4i-6.1.3-r3'.
 * The complete build log is located at '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r3/temp/environment'.
 * S: '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r3/work/ccp4-6.1.3'
!!! FAILED postinst: 1
>>> Regenerating /etc/ld.so.cache...

Portage 2.1.10.49 (default/linux/amd64/10.0/desktop/kde, gcc-4.5.3, glibc-2.14.1-r2, 3.2.1-gentoo-r1 x86_64)
=================================================================
System uname: Linux-3.2.1-gentoo-r1-x86_64-AMD_Phenom-tm-_9950_Quad-Core_Processor-with-gentoo-2.1
Timestamp of tree: Unknown
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.7 [disabled]
app-shells/bash:          4.2_p20
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.5.4-r4, 2.6.7-r2, 2.7.2-r3, 3.1.4-r3, 3.2.2
dev-util/ccache:          3.1.7
dev-util/cmake:           2.8.7-r3
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.3
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.3-r2
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.2 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r2
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs buildpkg distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alisp alsa amd64 aria assistant berkdb bluetooth branding bzip2 cairo cdda cdr cgi cli compat consolekit corefonts cracklib crypt cups cxx dbus declarative dri dts dvd dvdr emacs emboss encode examples exif fam firefox flac fontconfig fortran gcj gd gdbm gdu geos gif gpm gtk iconv icu ipv6 ithreads jpeg kde kdrive kipi lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mssql mudflap multilib mysql ncurses nls nptl nptlonly objc ocaml ogg opengl openmp pam pango pcre pdf perl phonon plasma png policykit ppds pppd pyqt4 python qt3support qt4 readline script sdl semantic-desktop session soundex spell sqlite sse sse2 ssl startup-notification svg sysfs tcpd threads tiff tk truetype udev unicode usb vorbis wxwidgets x264 xattr xcb xcomposite xinerama xml xorg xscreensaver xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Justin Lecher (RETIRED) 2012-02-26 10:47:04 UTC]

What is /bin/sh for you?

[Comment 2 Justin Lecher (RETIRED) 2012-02-27 07:21:17 UTC]

Please try following patch

Index: ccp4i-6.1.3-r3.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4i/ccp4i-6.1.3-r3.ebuild,v
retrieving revision 1.6
diff -u -B -r1.6 ccp4i-6.1.3-r3.ebuild
--- ccp4i-6.1.3-r3.ebuild	7 Sep 2011 17:24:17 -0000	1.6
+++ ccp4i-6.1.3-r3.ebuild	27 Feb 2012 07:20:20 -0000
@@ -92,7 +92,7 @@
 	_ccp4-setup() {
 		source "${EPREFIX}/etc/profile"
 		export USER=root
-		ccp4i -h > /dev/null
+		bash "${EPREFIX}"/usr/$(get_libdir)/ccp4/ccp4i/bin/ccp4i -h > /dev/null
 	}
 	VIRTUALX_COMMAND="_ccp4-setup" virtualmake
 	echo ""

[Comment 3 Patrick Lauer 2012-03-14 08:52:23 UTC]

(In reply to comment #2)
> Please try following patch

Doesn't work. Problem appears to be variables in that script, look at line 4 - the paths expand to "/" and then bltwish can't run

[Comment 4 Justin Lecher (RETIRED) 2012-12-13 16:00:17 UTC]

+  13 Dec 2012; Justin Lecher <[e-mail]> ccp4i-6.1.3-r3.ebuild,
+  metadata.xml:
+  Add missing dep on sci-libs/ccp4-libs, #405867
+