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Bug 368801

Summary: media-libs/lcms-1.19 - x86_64-pc-linux-gnu/bin/ld: /usr/lib64/python2.7/config/libpython2.7.a(abstract.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
Product: Gentoo Linux Reporter: Stephen Hall <steve>
Component: Current packagesAssignee: Gentoo Linux bug wranglers <bug-wranglers>
Status: RESOLVED CANTFIX    
Severity: major    
Priority: Normal    
Version: unspecified   
Hardware: AMD64   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: build log for media-libs/lcms-1.19

Description Stephen Hall 2011-05-26 17:55:10 UTC
I am attempting to emerge --update --deep world but consistently cannot get past the emerge of lcms-1.19. 

Reproducible: Always

Actual Results:  
The emerge fails with the following:

/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.5/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/python2.7/config/libpython2.7.a(abstract.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/python2.7/config/libpython2.7.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [_lcms.la] Error 1
emake failed
 * ERROR: media-libs/lcms-1.19 failed (compile phase):
 *   Building failed with CPython 2.7 in building() function
 * 
 * Call stack:
 *     ebuild.sh, line   56:  Called src_compile
 *   environment, line 5029:  Called python_execute_function '-s' '--source-dir' 'python' 'building'
 *   environment, line 3591:  Called die
 * The specific snippet of code:
 *                       die "${failure_message}";
 * 
 * If you need support, post the output of 'emerge --info =media-libs/lcms-1.19',
 * the complete build log and the output of 'emerge -pqv =media-libs/lcms-1.19'.
 * The complete build log is located at '/var/tmp/portage/media-libs/lcms-1.19/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/media-libs/lcms-1.19/temp/environment'.
 * S: '/var/tmp/portage/media-libs/lcms-1.19/work/lcms-1.19'

>>> Failed to emerge media-libs/lcms-1.19, Log file:

>>>  '/var/tmp/portage/media-libs/lcms-1.19/temp/build.log'

 * Messages for package media-libs/lcms-1.19:

 * ERROR: media-libs/lcms-1.19 failed (compile phase):
 *   Building failed with CPython 2.7 in building() function
 * 
 * Call stack:
 *     ebuild.sh, line   56:  Called src_compile
 *   environment, line 5029:  Called python_execute_function '-s' '--source-dir' 'python' 'building'
 *   environment, line 3591:  Called die
 * The specific snippet of code:
 *                       die "${failure_message}";
 * 
 * If you need support, post the output of 'emerge --info =media-libs/lcms-1.19',
 * the complete build log and the output of 'emerge -pqv =media-libs/lcms-1.19'.
 * The complete build log is located at '/var/tmp/portage/media-libs/lcms-1.19/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/media-libs/lcms-1.19/temp/environment'.
 * S: '/var/tmp/portage/media-libs/lcms-1.19/work/lcms-1.19'

 * IMPORTANT: 1 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.



paris elog # emerge --info =media-libs/lcms-1.19
Portage 2.1.9.42 (default/linux/amd64/10.0, gcc-4.4.5, libc-0-r0, 2.6.25-gentoo-r7 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-2.6.25-gentoo-r7-x86_64-Quad-Core_AMD_Opteron-tm-_Processor_2356-with-gentoo-2.0.2
Timestamp of tree: Wed, 25 May 2011 01:45:01 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r3
dev-lang/python:     2.7.1-r1, 3.1.3-r1
dev-util/cmake:      2.8.4
sys-apps/baselayout: 2.0.2
sys-apps/openrc:     0.8.2-r1
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.65-r1
sys-devel/automake:  1.10.1, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.4.5
sys-devel/gcc-config: 1.4.1-r1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.81-r2
sys-kernel/linux-headers: 2.6.36.1
sys-libs/glibc:      2.12.2
virtual/os-headers:  0
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=k8 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=k8 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://trumpetti.atm.tut.fi/gentoo/ http://gentoo.modulix.net/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo http://mirror.gentoo.no/"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://192.168.0.1/gentoo-portage"
USE="X acl amd64 berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 mmx modules mudflap multilib ncurses nls nptl nptlonly openmp pam pcre perl pppd python readline session sse sse2 ssl sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="auth_digest authz_host dir mime authn_file setenvif authz_user autoindex alias proxy proxy_balancer proxy_connect proxy_http log_config" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

paris elog # emerge -pqv =media-libs/lcms-1.19
[ebuild  NS   ] media-libs/lcms-1.19 [2.0a] USE="python zlib -jpeg -static-libs -tiff" 

 * IMPORTANT: 1 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.
Comment 1 Rafał Mużyło 2011-05-26 18:21:30 UTC
Did you check python-updater and 'eselect python' yet ?
That error means a failure to find shared python lib.

Attach full build log.
Comment 2 Stephen Hall 2011-05-26 18:38:56 UTC
Hello-

-Running python-updater reinstalls app-emulation/emul-linux-x86-baselibs-20110129 and app-editors/vim-7.3.135 without incident. 

-Running eselect python list gives me:

paris Europe # eselect python list
Available Python interpreters:
  [1]   python2.7
  [2]   python3.1 *
Comment 3 Stephen Hall 2011-05-26 18:41:23 UTC
Created attachment 274711 [details]
build log for media-libs/lcms-1.19
Comment 4 Rafał Mużyło 2011-05-27 00:25:51 UTC
Wait, which package does /usr/lib64/python2.7/config/libpython2.7.a belong to ?

I see the static archive in libdir, but not in libdir/python2.7/config.

Above doesn't change the fact, that shared lib should be found first.
Comment 5 Stephen Hall 2011-05-27 11:18:24 UTC
I have no idea. The Gentoo packaging system is new to me.
Comment 6 Bernd Butscheidt 2011-05-28 17:05:48 UTC
(In reply to comment #5)
> I have no idea. The Gentoo packaging system is new to me.

equery b /usr/lib64/python2.7/config/libpython2.7.a

gave me an empty output. I remember I did a manual install of python because I screwed up with emerge --unmerge and had no other choice to make portage work again.

So I just deleted the file:

rm /usr/lib64/python2.7/config/libpython2.7.a

and got rid of the error described here with emerging of lcms-1.19 without further problems.
Comment 7 Stephen Hall 2011-05-30 16:03:31 UTC
Fantastic! Running equery b also yielded no results so I deleted the file and tried emerge again. This time it succeeded. Thanks for the help!