Bug 365923 – sci-chemistry/openbabel fails tests

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Diego Elio Pettenò (RETIRED) 2011-05-04 10:30:18 UTC]

Portage 2.1.9.46 (default/linux/x86/10.0, gcc-4.6.0-asneeded, libc-0-r0, 2.6.38.5 i686)
=================================================================
System uname: Linux-2.6.38.5-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.2
Timestamp of tree: Wed, 04 May 2011 00:30:01 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 3.1.4 [disabled]
app-shells/bash:     4.2_p8-r1
dev-java/java-config: 2.1.11-r3
dev-lang/python:     2.4.6, 2.7.1-r1, 3.1.3-r1
dev-util/ccache:     3.1.4
sys-apps/baselayout: 2.0.2
sys-apps/openrc:     0.8.2-r1
sys-apps/sandbox:    2.5
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1-r1
sys-devel/binutils:  2.21
sys-devel/gcc:       4.5.2, 4.6.0
sys-devel/gcc-config: 1.4.1-r1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
sys-kernel/linux-headers: 2.6.38
sys-libs/glibc:      2.13-r2
virtual/os-headers:  0
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib/tomoyo/conf /usr/share/bufrtables /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa /usr/share/qpsmtpd/plugins /var/lib/hsqldb /var/phxd /var/qmail/alias /var/qmail/control /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms split-log strict test test-fail-continue unknown-features-warn unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.wheel.sk/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j14"
PKGDIR="/var/spool/portage/packages"
PORTAGE_COMPRESS=""
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/var/cache/portage/tree"
PORTDIR_OVERLAY=""
SYNC="rsync://yamato.home.flameeyes.eu/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 java5 java6 modules mudflap mysql ncurses nls nostatic nptl nptlonly openmp pam pcre pcsc-lite perl postgres pppd python qt3support readline ruby session ssl sysfs tcpd unicode vhosts x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias auth_digest cgi" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18 jruby ruby19 ree18" USERLAND="GNU" VIDEO_CARDS="intel radeon nouveau vmware" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Diego Elio Pettenò (RETIRED) 2011-05-04 10:32:22 UTC]

Created attachment 272059 [details]
Build log (compressed)

[Comment 2 Justin Lecher (RETIRED) 2011-05-07 08:19:42 UTC]

What is your main python version?

[Comment 3 Justin Lecher (RETIRED) 2011-05-07 09:18:03 UTC]

+  07 May 2011; Justin Lecher <[e-mail]> openbabel-2.3.0.ebuild:
+  Do not test things which are installed as PDEPEND like openbabel-python
+