Summary: | app-portage/gentoolkit - equery depends: Invalid atom: '4473' | ||
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Product: | Gentoo Linux | Reporter: | Henrique Dias <henrique.ribeiro.dias> |
Component: | New packages | Assignee: | Gentoo Linux bug wranglers <bug-wranglers> |
Status: | RESOLVED FIXED | ||
Severity: | normal | ||
Priority: | High | ||
Version: | unspecified | ||
Hardware: | AMD64 | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- |
Description
Henrique Dias
2011-02-01 21:08:30 UTC
Looks like something in /etc/portage is doing this. grep -r 4473 /etc/portage Also, uninstall policykit - it's masked /because/ nothing any longer depends on it. I have already uninstalled the policykit. Because of this I have this problem! # grep -r 4473 /etc/portage this don't give anything. # emerge --search policykit Searching... [ Results for search key : policykit ] [ Applications found : 0 ] # equery depends policykit * These packages depend on policykit: !!! Invalid atom: '4473' Anything in /var/lib/portage/world or /usr/portage/local perhaps? # grep -r 4473 /var/lib/portage/world nothing # grep -r 4473 /usr/portage/local nothing I discovered that this problem happens with any package that I search. # equery depends hal * These packages depend on hal: app-misc/hal-info-20091130 (>=sys-apps/hal-0.5.10) gnome-base/gnome-applets-2.32.1.1 (hal ? >=sys-apps/hal-0.5.3) gnome-base/gnome-vfs-2.24.4 (hal ? >=sys-apps/hal-0.5.7) gnome-base/gvfs-1.6.6-r1 (>=sys-apps/hal-0.5.10) media-gfx/gimp-2.6.11 (hal ? sys-apps/hal) !!! Invalid atom: '4473' # equery depends app-arch/zip * These packages depend on app-arch/zip: cross-avr/gcc-4.2.4-r1 (app-arch/zip) dev-java/ant-core-1.8.1 (source ? app-arch/zip) dev-libs/zziplib-0.13.60 (test ? app-arch/zip) media-gfx/hugin-2010.4.0 (app-arch/zip) net-libs/xulrunner-1.9.2.13-r1 (app-arch/zip) sys-devel/gcc-4.4.5 (app-arch/zip) sys-devel/gcc-4.5.2 (app-arch/zip) !!! Invalid atom: '4473' # equery depends jpeg * These packages depend on jpeg: app-editors/xemacs-21.5.29-r2 (jpeg ? virtual/jpeg) app-text/ghostscript-gpl-9.00 (virtual/jpeg) app-text/poppler-0.16.2 (jpeg ? virtual/jpeg) dev-dotnet/libgdiplus-2.8.1 (virtual/jpeg) dev-java/icedtea6-bin-1.9 (>=media-libs/jpeg-8) dev-python/imaging-1.1.7 (virtual/jpeg) media-gfx/autopano-sift-C-2.5.1 (virtual/jpeg) media-gfx/enblend-4.0 (virtual/jpeg) media-gfx/feh-1.11.1 (virtual/jpeg) media-gfx/gimp-2.6.11 (jpeg ? virtual/jpeg) media-gfx/graphviz-2.26.3-r3 (virtual/jpeg) media-gfx/hugin-2010.4.0 (virtual/jpeg) media-gfx/imagemagick-6.6.5.6 (jpeg ? virtual/jpeg) media-gfx/splashutils-1.5.4.3-r3 (>=media-libs/jpeg-6b:0[static-libs]) media-gfx/xv-3.10a-r15 (jpeg ? >=media-libs/jpeg-6b) media-libs/gd-2.0.35-r2 (jpeg ? virtual/jpeg) media-libs/gegl-0.1.2 (jpeg ? virtual/jpeg) media-libs/imlib2-1.4.4 (jpeg ? virtual/jpeg) media-libs/lcms-1.19 (jpeg ? virtual/jpeg) media-libs/lcms-2.1 (jpeg ? virtual/jpeg) media-libs/libmng-1.0.10 (virtual/jpeg) media-libs/libpano13-2.9.17 (virtual/jpeg) media-libs/netpbm-10.51.00-r1 (jpeg ? virtual/jpeg) media-libs/tiff-4.0.0_beta6 (jpeg ? virtual/jpeg) net-libs/xulrunner-1.9.2.13-r1 (virtual/jpeg) net-misc/tightvnc-1.3.10-r1 (media-libs/jpeg) net-misc/vino-2.32.1 (jpeg ? virtual/jpeg:0) net-print/cups-1.4.6 (jpeg ? virtual/jpeg:0) virtual/jpeg-0 (media-libs/jpeg:0) !!! Invalid atom: '4473' Which version of app-portage/gentoolkit is that? (In reply to comment #5) > Which version of app-portage/gentoolkit is that? > app-portage/gentoolkit Latest version available: 0.3.0_rc11-r3 Latest version installed: 0.3.0_rc11-r3 I reemerge the gentoolkit but the problem remains. >>> Installing (1 of 1) app-portage/gentoolkit-0.3.0_rc11-r3 * Compilation and optimization of Python modules for CPython 2.7 ... [ ok ] * Compilation and optimization of Python modules for CPython 3.1 ... [ ok ] * * For further information on gentoolkit, please read the gentoolkit * guide: http://www.gentoo.org/doc/en/gentoolkit.xml * * Another alternative to equery is app-portage/portage-utils >>> Auto-cleaning packages... >>> No outdated packages were found on your system. * GNU info directory index is up-to-date. # equery depends gentoolkit * These packages depend on gentoolkit: !!! Invalid atom: '4473' Do the grep on /var/db/pkg since that is where equery searches (In reply to comment #8) > Do the grep on /var/db/pkg since that is where equery searches > I get a lot of lines with the string '4473'. It's safe remove this directory? /var/db/pkg/app-office/dia-0.97.1/CONTENTS:obj /usr/share/dia/shapes/Cybernetics/factor-greater1.shape 1a1156ae447368066d2a3e350c7b9ed1 1290988383 /var/db/pkg/app-office/dia-0.97.1/CONTENTS:obj /usr/share/dia/shapes/Lights/Structure.png e5763bee8a4ee346f6688f09f24473b0 1290988383 /var/db/pkg/app-office/dia-0.97.1/CONTENTS:obj /usr/share/gnome/help/dia/en/graphics/file-preferences-ui.png 14e66cd26328a44f3a8c7f4473952f11 1290988387 /var/db/pkg/app-office/dia-0.97.1/CONTENTS:obj /usr/share/gnome/help/dia/en/graphics/polyline-rightclick.png 9bdae421323093c34473d7574212e399 1290988387 ... No no do NOT remove it, just wanted to see if there was a particular file that was corrupt in which case reinstalling the corresponding package should make equery happy Suggestion, try 'grep -w' to avoid getting false hits on all those checksums with this number as a substring (In reply to comment #11) > Suggestion, try 'grep -w' to avoid getting false hits on all those checksums > with this number as a substring > Ok, I found one. # grep -rw 4473 /var/db/pkg Binary file /var/db/pkg/virtual/perl-Scalar-List-Utils-1.21/RDEPEND matches # more /var/db/pkg/virtual/perl-Scalar-List-Utils-1.21/RDEPEND matches 4473 I reemerge the package. # emerge virtual/perl-Scalar-List-Utils And the problem remains. # equery depends gentoolkit * These packages depend on gentoolkit: !!! Invalid atom: '4473' When I tried to remove the package happened this: # emerge -C virtual/perl-Scalar-List-Utils * This action can remove important packages! In order to be safer, use * `emerge -pv --depclean <atom>` to check for reverse dependencies before * removing packages. virtual/perl-Scalar-List-Utils selected: 1.21 1.23 protected: none omitted: none All selected packages: virtual/perl-Scalar-List-Utils-1.23 virtual/perl-Scalar-List-Utils-1.21 >>> 'Selected' packages are slated for removal. >>> 'Protected' and 'omitted' packages will not be removed. >>> Waiting 5 seconds before starting... >>> (Control-C to abort)... >>> Unmerging in: 5 4 3 2 1 >>> Unmerging virtual/perl-Scalar-List-Utils-1.23... >>> Unmerging virtual/perl-Scalar-List-Utils-1.21... !!! FAILED prerm: /var/db/pkg/virtual/perl-Scalar-List-Utils-1.21/EAPI Unable to do any operations on 'virtual/perl-Scalar-List-Utils-1.21', since its EAPI is higher than this portage version's. Please upgrade to a portage version that supports EAPI '+'. But the problem disappeared. # equery depends gentoolkit * These packages depend on gentoolkit: I reemerge the package. # emerge virtual/perl-Scalar-List-Utils # equery depends gentoolkit * These packages depend on gentoolkit: # equery depends perl-Scalar-List-Utils * These packages depend on perl-Scalar-List-Utils: app-editors/padre-0.800 (>=virtual/perl-Scalar-List-Utils-1.18) dev-perl/Class-Adapter-1.07 (>=virtual/perl-Scalar-List-Utils-1.10) dev-perl/Class-MOP-1.120 (>=virtual/perl-Scalar-List-Utils-1.18) dev-perl/Devel-Dumpvar-1.06 (>=virtual/perl-Scalar-List-Utils-1.18) dev-perl/IO-Socket-SSL-1.380 (virtual/perl-Scalar-List-Utils) dev-perl/Moose-1.21 (>=virtual/perl-Scalar-List-Utils-1.19) dev-perl/PPI-1.213 (>=virtual/perl-Scalar-List-Utils-1.20) dev-perl/PPIx-Regexp-0.16 (virtual/perl-Scalar-List-Utils) dev-perl/Params-Util-1.03 (>=virtual/perl-Scalar-List-Utils-1.18) dev-perl/Pod-Abstract-0.20 (virtual/perl-Scalar-List-Utils) dev-perl/Thread-Queue-2.11 (virtual/perl-Scalar-List-Utils) dev-perl/Thread-Semaphore-2.11 (virtual/perl-Scalar-List-Utils) perl-core/IO-Compress-2.33 (virtual/perl-Scalar-List-Utils) perl-core/Math-BigInt-1.99 (>=virtual/perl-Scalar-List-Utils-1.14) Permanently the problem disappeared :-) Thanks guys for the help. |