Bug 328225

Summary:	dev-python/pytables fails tests
Product:	Gentoo Linux	Reporter:	Diego Elio Pettenò (RETIRED) <flameeyes>
Component:	New packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	RESOLVED NEEDINFO
Severity:	normal	CC:	python
Priority:	High
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	Build log

Description Diego Elio Pettenò (RETIRED) gentoo-dev

2010-07-14 07:15:01 UTC

Portage 2.1.8.3 (default/linux/x86/10.0, gcc-4.5.0-asneeded, glibc-2.11.2-r0, 2.6.34.1 i686)
=================================================================
System uname: Linux-2.6.34.1-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.1
Timestamp of tree: Wed, 14 Jul 2010 00:00:22 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 2.4 [disabled]
app-shells/bash:     4.1_p7
dev-java/java-config: 2.1.11
dev-lang/python:     2.6.5-r2, 2.7, 3.1.2-r4
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.1-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65-r1
sys-devel/automake:  1.4_p6-r1, 1.5-r1, 1.6.3-r1, 1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.5.0
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
virtual/os-headers:  2.6.34
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openjms/config /usr/lib/tomoyo/conf /usr/share/X11/xkb /usr/share/bufrtables /usr/share/qpsmtpd/plugins /var/bind /var/lib/hsqldb /var/phxd /var/qmail/alias /var/qmail/control /var/spool/torque /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms split-log strict test test-fail-continue unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.wheel.sk/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j14"
PKGDIR="/var/spool/portage/packages"
PORTAGE_COMPRESS=""
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/var/cache/portage/tree-tinderbox"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 java5 java6 modules mudflap ncurses nls nostatic nptl nptlonly openmp pam pcre perl pppd python qt3support readline reflection ruby session spl ssl sysfs tcpd unicode vhosts x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias auth_digest cgi" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18 jruby ruby19 ree18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknoclines 1-44

Comment 1 Diego Elio Pettenò (RETIRED) gentoo-dev

2010-07-14 07:15:16 UTC

Created attachment 238691 [details]
Build log

Comment 2 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2010-07-14 08:29:19 UTC

It's a known failure with hdf5 compiled with strict checks. They were enabled by default till:

  03 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.5.ebuild,
  metadata.xml:
  Adding debug flag

Upstream was notified about the issue[1], but resolved it as WONTFIX. Could you please verify whether you merged hdf5 with [debug] or before 03 Jul?
Thanks,
Kacper
 
[1] http://www.pytables.org/trac/ticket/245