Bug 316769 – sci-libs/clapack and sci-libs/lapack-atlas collide

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Diego Elio Pettenò (RETIRED) 2010-04-23 06:33:26 UTC]

Portage 2.1.8.3 (default/linux/x86/10.0, gcc-4.4.3-asneeded, glibc-2.11-r1, 2.6.33.2 i686)
=================================================================
System uname: Linux-2.6.33.2-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.1
Timestamp of tree: Wed, 21 Apr 2010 10:30:01 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 2.4 [disabled]
app-shells/bash:     4.1_p5
dev-java/java-config: 1.3.7-r1, 2.1.10
dev-lang/python:     2.6.5-r1, 3.1.2-r2
dev-python/pycrypto: 2.1.0
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.8.1-r1
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.1-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.4_p6-r1, 1.5-r1, 1.6.3-r1, 1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1
sys-devel/gcc:       4.4.3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.33
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /opt/openjms/config /usr/lib/fax /usr/share/X11/xkb /usr/share/bufrtables /usr/share/config /usr/share/qpsmtpd/plugins /var/bind /var/lib/hsqldb /var/phxd /var/spool/fax/etc /var/spool/torque /var/vpopmail/etc /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms split-log strict test test-fail-continue unmerge-orphans userfetch userpriv usersandbox"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j14"
PKGDIR="/var/spool/portage/packages"
PORTAGE_COMPRESS=""
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/var/cache/portage/tree-tinderbox"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 java5 java6 modules mudflap ncurses nls nostatic nptl nptlonly openmp pam pcre perl pppd python qt3support readline reflection ruby session spl ssl sysfs tcpd unicode vhosts x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias auth_digest" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="lines 1-45

[Comment 1 Diego Elio Pettenò (RETIRED) 2010-04-23 06:33:40 UTC]

Created attachment 228845 [details]
Build log

[Comment 2 Justin Lecher (RETIRED) 2010-04-23 06:40:08 UTC]

Perhaps we should create a virtual, but I will think about it. Strange that I didn't recognized it as I had atlas for all time and wrote the clapack ebuild.
Thanks anyway.

[Comment 3 Justin Lecher (RETIRED) 2010-04-23 06:45:06 UTC]

meta package I mean

[Comment 4 Sébastien Fabbro (RETIRED) 2010-04-23 13:58:25 UTC]

clapack from atlas does not have the same API as clapack from clapack from netlib. The former has clapack_* routines and the latter is merely a f2c'ed version of lapack.
So I would suggest to install the header files in different paths, and either add cppflags to lapack-atlas pkg-config file (and check the dependent ebuilds) or add cppflags to packages dependent on sci-libs/clapack.

[Comment 5 Justin Lecher (RETIRED) 2010-04-25 09:49:12 UTC]

fixed, as well as the missing SONAME