| Summary: | [science overlay] sci-biology/samtools: new package | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Martin Mokrejš <mmokrejs> |
| Component: | New packages | Assignee: | Default Assignee for New Packages <maintainer-wanted> |
| Status: | RESOLVED FIXED | ||
| Severity: | enhancement | CC: | mark_alec, sci-biology |
| Priority: | High | Keywords: | EBUILD, InOverlay |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 311847 | ||
| Attachments: |
samtools-0.1.7a.ebuild
samtools-0.1.7a.ebuild samtools-0.1.7a.ebuild samtools-0.1.7a.ebuild |
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Description
Martin Mokrejš
2010-03-28 23:51:42 UTC
Created attachment 225611 [details]
samtools-0.1.7a.ebuild
Tested ebuild.
Created attachment 225613 [details]
samtools-0.1.7a.ebuild
staden also needs libbam.a and two headers files.
This ebuild also installs the pre-formated manpage under /usr/man/man1 although I thought it should go under /usr/man/cat1. But, 'man samtools' gives formatted output, probably man(1) is probably smart enough not to touch the formatting anymore?
Created attachment 241039 [details]
samtools-0.1.7a.ebuild
Added few more header files to src_install() needed by sci-biology/staden to compile. Please note my ebuild differs from the one currently in overlay, which is eapi2 only. I haven't inspected much their differences, sorry.
Created attachment 241063 [details] samtools-0.1.7a.ebuild Added -fPIC flags per discussion with staden developer: https://sourceforge.net/tracker/index.php?func=detail&aid=3038188&group_id=100316&atid=627058 I am quite happy with this ebuild, please move into official portage tree. It seems I managed to commit my first ebuild (samtools-0.1.7a.ebuild) to the overlay, please test, report and eventually cherry-pick into the official tree and close this bug if it is ok. In main tree and request filed for stable, congrats Martin |
