| Summary: | pdfetex from dev-texlive/texlive-basic-2009 segfaults when emerging sci-mathematics/ginac-1.5.6 with USE=doc | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Andrey Grozin <grozin> |
| Component: | Current packages | Assignee: | Gentoo Science Mathematics related packages <sci-mathematics> |
| Status: | RESOLVED WORKSFORME | ||
| Severity: | normal | CC: | rose, tex |
| Priority: | High | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
|
Description
Andrey Grozin
2010-02-07 10:29:34 UTC
Same error here with:
root@inspironM12:/usr/local/portage/media-gfx/freewrl(81)# emerge --info --info =sci-mathematics/ginac-1.5.6
Portage 2.1.7.17 (default/linux/x86/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.32-gentoo-r1 i686)
=================================================================
System Settings
=================================================================
System uname: Linux-2.6.32-gentoo-r1-i686-Intel-R-_Atom-TM-_CPU_Z520_@_1.33GHz-with-gentoo-2.0.1
Timestamp of tree: Sun, 07 Feb 2010 09:00:01 +0000
app-shells/bash: 4.0_p37
dev-java/java-config: 2.1.10
dev-lang/python: 2.6.4-r1, 3.1.1-r1
dev-python/pycrypto: 2.1.0
dev-util/cmake: 2.8.0-r1
sys-apps/baselayout: 2.0.1
sys-apps/openrc: 0.6.0-r1
sys-apps/sandbox: 2.2
sys-devel/autoconf: 2.13, 2.65
sys-devel/automake: 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils: 2.20
sys-devel/gcc: 4.4.2
sys-devel/gcc-config: 1.4.1
sys-devel/libtool: 2.2.6b
virtual/os-headers: 2.6.30-r1
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=core2 -mtune=generic -fomit-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=core2 -mtune=generic -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LC_ALL="C"
LDFLAGS="-Wl,-O1"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/java-overlay /var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/zugaina /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X Xaw3d a52 aac acl acpi administrator afs alsa ao aotuv apache2 asf aspell atlas audacious audiofile automount bash-completion beagle berkdb blas bluetooth boo boost branding bzip2 c++ cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt cups curl cxx daap dbus dell device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi dxr3 eds elf emacs emboss encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 gpm graphics graphtft graphviz gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea kvm ladspa lame lapack laptop latex lcms ldap libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper math matroska mikmod mmx mmxext mng modules mono motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python qhull qt3 qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl semantic-desktop server session slang slp smbclient smp sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wifi win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="psb intel vesa"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
root@inspironM12:/usr/local/portage/media-gfx/freewrl(82)# emerge -pqv =sci-mathematics/ginac-1.5.6 [ebuild U ] sci-mathematics/ginac-1.5.6 [1.5.5] USE="doc" builds fine here, if it uses texi2dvi it should depend on the virtual (In reply to comment #3) > builds fine here, if it uses texi2dvi it should depend on the virtual Dependencies of ginac is a separate question. The problem is: pdfetex is broken. It may emit error messages if it does not like ginac texi files. But it must not segfault. (In reply to comment #4) > (In reply to comment #3) > > builds fine here, if it uses texi2dvi it should depend on the virtual > Dependencies of ginac is a separate question. The problem is: pdfetex is > broken. It may emit error messages if it does not like ginac texi files. But it > must not segfault. > without a backtrace, this is hard to tell. Also you should try without nonstopmode Today I decided to investigate the problem, but found that I no longer can reproduce it. Don't know what has changes, a few upgrades which don't seem relevant. If anybody else still has this problem, they'll have to investigate, otherwise we can close this bug. By the way, I've inserted virtual/texi2dvi to the ginac dependencies with USE=doc. I still have the issue. root@inspironM12:/root(136)#emerge -vuDN world ... Chapter 4 [9] [10] [11]/usr/bin/texi2dvi: line 966: 9334 Segmentation fault pdfetex --file-line-error '\nonstopmode' '\input' './ginac.texi' < /dev/null /usr/bin/texi2dvi: pdfetex exited with bad status, quitting. make: *** [ginac.pdf] Error 1 * ERROR: sci-mathematics/ginac-1.5.6 failed: * emake doc tutorial failed It happens also on a second i696 system:
thinkpad ~ # emerge -vuDN world
...
Running /usr/bin/fig2dev -L pdf -m 0.9 repreal.fig repreal.pdf...
TEXINPUTS="../../config:$TEXINPUTS" \
MAKEINFO='/bin/sh /var/tmp/portage/sci-mathematics/ginac-1.5.6/work/ginac-1.5.6/config/missing --run makeinfo -I .' \
texi2dvi --pdf --batch ginac.texi
This is pdfTeX, Version 3.1415926-1.40.10 (Web2C 2009)
entering extended mode
(./ginac.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2009-08-14.15]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/usr/share/texmf-dist/tex/generic/epsf/epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./version.texi) [1{//var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] [-1] (GiNaC) Chapter 1 [1] Chapter 2 [2]
Cross reference values unknown; you must run TeX again. [3] [4] [5] Chapter 3
[6] [7] [8]
Underfull \hbox (badness 10000) in paragraph at lines 659--665
[]@textrm `@texttt libginac.a[]@textrm '[] will go into `@textttsl PRE-FIX@tex
ttt /lib/[]@textrm '[] (or `@textttsl LIB-DIR[]@textrm '[]) which de-faults to
Underfull \hbox (badness 5203) in paragraph at lines 666--669
[]@textrm All the header files will be in-stalled into `@textttsl PRE-FIX@text
tt /include/ginac/[]@textrm '[] (or `@textttsl IN-
Underfull \hbox (badness 6927) in paragraph at lines 670--674
[]@textrm All doc-u-men-ta-tion (info) will be stuffed into `@textttsl PRE-FIX
@texttt /share/doc/GiNaC/[]@textrm '[] (or
Chapter 4 [9] [10] [11]/usr/bin/texi2dvi: line 966: 6331 Segmentation fault pdfetex --file-line-error '\nonstopmode' '\input' './ginac.texi' < /dev/null
/usr/bin/texi2dvi: pdfetex exited with bad status, quitting.
make: *** [ginac.pdf] Error 1
Also reemerging of sys-apps/texinfo texlive-pictures texlive-basic and texlive did not solve the problem. I get the same error also on other i686 systems:
...
Chapter 4 [9] [10] [11]/usr/bin/texi2dvi: line 966: 20839 Segmentation fault pdfetex --file-line-error '\nonstopmode' '\input' './ginac.texi' < /dev/null
/usr/bin/texi2dvi: pdfetex exited with bad status, quitting.
make: *** [ginac.pdf] Error 1
* ERROR: sci-mathematics/ginac-1.5.6 failed:
* emake doc tutorial failed
...
root@thinkpad:/root(11)# emerge --info =sci-mathematics/ginac-1.5.6
Portage 2.1.8.1 (default/linux/x86/10.0/desktop, gcc-4.4.3, glibc-2.11-r1, 2.6.32-gentoo-r3 i686)
=================================================================
System Settings
=================================================================
System uname: Linux-2.6.32-gentoo-r3-i686-Intel-R-_Pentium-R-_M_processor_2.00GHz-with-gentoo-2.0.1
Timestamp of tree: Sun, 07 Mar 2010 12:00:01 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 2.4 [disabled]
app-shells/bash: 4.1_p2
dev-java/java-config: 2.1.10
dev-lang/python: 2.6.4-r1, 3.1.1-r1
dev-python/pycrypto: 2.1.0
dev-util/ccache: 2.4-r8
dev-util/cmake: 2.8.0-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc: 0.6.0-r1
sys-apps/sandbox: 2.2
sys-devel/autoconf: 2.13, 2.65
sys-devel/automake: 1.4_p6, 1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils: 2.20-r1
sys-devel/gcc: 3.4.6-r2, 4.4.3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool: 2.2.6b
virtual/os-headers: 2.6.32
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://vlaai.snt.ipv6.utwente.nl/pub/os/linux/gentoo/"
LDFLAGS="-Wl,-O1"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/dotnet /var/lib/layman/java-overlay /var/lib/layman/lordvan /var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/zugaina /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X Xaw3d a52 aac abiword acl acpi administrator afs alsa amrr ao aotuv apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 c++ cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi eds elf emacs emboss empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad madwifi mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python qemu qhull qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wifi win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0 ac97_codec emu10k1 emu10k1x" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="usb-wt220u" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="radeon vesa displaylink"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
=================================================================
Package Settings
=================================================================
sci-mathematics/ginac-1.5.6 was built with the following:
USE="-doc"
root@thinkpad:/root(12)# emerge -pqv =sci-mathematics/ginac-1.5.6
[ebuild R ] sci-mathematics/ginac-1.5.6 USE="doc*"
Is the failure reproducible after rebuilding app-text/poppler, app-text/texlive-core, dev-tex/luatex? At two of three i686 systems 'emerge ginac' works now. The third system I will test tomorrow. (In reply to comment #13) > At two of three i686 systems 'emerge ginac' works now. The third system I will > test tomorrow. > Thanks! Closing then. |