Summary: | dev-java/java-config: gjl launcher will override env variables (including PATH) from VM's env file when VM is providing a java-virtual | ||
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Product: | Gentoo Linux | Reporter: | Koen Smets <koen.smets> |
Component: | Current packages | Assignee: | Java team <java> |
Status: | RESOLVED FIXED | ||
Severity: | major | Keywords: | InVCS |
Priority: | High | ||
Version: | unspecified | ||
Hardware: | AMD64 | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- |
Description
Koen Smets
2009-12-20 19:37:57 UTC
(In reply to comment #0) Please note, that the original released jar-file (http://sourceforge.net/projects/jabref/files/jabref/2.6%20beta%202/JabRef-2.6b2.jar/download) runs also perfectly on my system. Can you post the output of the following from the same terminal window: java -version GJL_DEBUG=1 jabref see if the error produces anything more in the terminal, and in jabref's error console exception tab? (under menu help) (In reply to comment #1) > (In reply to comment #0) > > Please note, that the original released jar-file > (http://sourceforge.net/projects/jabref/files/jabref/2.6%20beta%202/JabRef-2.6b2.jar/download) > runs also perfectly on my system. > Did you run it with java -jar jabref.jar or replaced the jar in /usr/share/jabref and run with our jabref launcher? $ java -version java version "1.6.0_18" Java(TM) SE Runtime Environment (build 1.6.0_18-b07) Java HotSpot(TM) 64-Bit Server VM (build 16.0-b13, mixed mode) $ GJL_DEBUG=1 jabref Calling: gjl --package jabref --get-args --get-vm Using: Running: exec java -classpath /usr/share/xsdlib/lib/xsdlib.jar:/usr/share/jaxme/lib/jaxmejs.jar:/usr/share/bcmail/lib/bcmail.jar:/usr/share/xml-commons-resolver/lib/xml-commons-resolver.jar:/usr/share/ant-core/lib/ant.jar:/usr/share/jabref/lib/jabref.jar:/usr/share/asm-1.5/lib/asm-attrs.jar:/usr/share/jdom-1.0/lib/jdom.jar:/usr/share/sun-jaf/lib/activation.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-jdk14.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz.jar:/usr/share/xpp3/lib/xpp3.jar:/usr/share/servletapi-2.4/lib/jsp-api.jar:/usr/share/xalan-serializer/lib/serializer.jar:/usr/share/jgoodies-looks-2.0/lib/looks.jar:/usr/share/cglib-2.1/lib/cglib.jar:/usr/share/ant-core/lib/ant-launcher.jar:/usr/share/jpfcodegen/lib/JPFCodeGenerator-rt.jar:/usr/share/commons-lang-2.1/lib/commons-lang.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-core.jar:/usr/share/jaxme/lib/jaxmexs.jar:/usr/share/commons-logging/lib/commons-logging-adapters.jar:/usr/share/trove/lib/trove.jar:/usr/share/microba/lib/microba.jar:/usr/share/jabref/lib/antlr-3.0b5.jar:/usr/share/dom4j-1/lib/dom4j.jar:/usr/share/sun-javamail/lib/mail.jar:/usr/share/jdom-jaxen-1.0/lib/jdom-jaxen.jar:/usr/share/tomcat-servlet-api-2.3/lib/servlet.jar:/usr/share/xpp2/lib/PullParser-standard.jar:/usr/share/xalan/lib/xalan.jar:/usr/share/fontbox/lib/fontbox.jar:/usr/share/commons-collections/lib/commons-collections.jar:/usr/share/asm-1.5/lib/kasm.jar:/usr/share/relaxng-datatype/lib/relaxngDatatype.jar:/usr/share/bcel/lib/bcel.jar:/usr/share/jempbox/lib/jempbox.jar:/usr/share/asm-1.5/lib/asm.jar:/usr/share/jgraph/lib/jgraph.jar:/usr/share/glazedlists/lib/glazedlists.jar:/usr/share/jgoodies-forms/lib/forms.jar:/usr/share/javacup/lib/javacup.jar:/usr/share/bcprov/lib/bcprov.jar:/usr/share/concurrent-util/lib/concurrent.jar:/usr/share/xmldb/lib/xmldb-api-sdk.jar:/usr/share/jpfcodegen/lib/JPFCodeGenerator.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-nodeps-jdk14.jar:/usr/share/xerces-2/lib/xercesImpl.jar:/usr/share/xpp2/lib/PullParser-x2.jar:/usr/share/lucene-2.1/lib/lucene-demos.jar:/usr/share/xpp2/lib/PullParser.jar:/usr/share/werken-xpath/lib/werken.xpath.jar:/usr/share/xml-commons-external-1.3/lib/xml-apis.jar:/usr/share/xml-commons-external-1.3/lib/xml-apis-ext.jar:/usr/share/avalon-logkit-2.0/lib/avalon-logkit.jar:/usr/share/jaxme/lib/jaxme2.jar:/usr/share/antlr/lib/antlr.jar:/usr/share/lucene-2.1/lib/lucene-core.jar:/usr/share/glassfish-jms-api/lib/glassfish-jms-api.jar:/usr/share/jrexx/lib/jrexx.jar:/usr/share/servletapi-2.4/lib/servlet-api.jar:/usr/share/ant-core/lib/ant-bootstrap.jar:/usr/share/jakarta-oro-2.0/lib/jakarta-oro.jar:/usr/share/jsr173/lib/jsr173.jar:/usr/share/jpf-1.5/lib/jpf.jar:/usr/share/log4j/lib/log4j.jar:/usr/share/jaxme/lib/jaxmeapi.jar:/usr/share/pdfbox/lib/pdfbox.jar:/usr/share/jdom-1.0_beta9/lib/jdom.jar:/usr/share/qdox-1.6/lib/qdox.jar:/usr/share/commons-logging/lib/commons-logging.jar:/usr/share/asm-1.5/lib/asm-xml.jar:/usr/share/velocity/lib/velocity.jar:/usr/share/jaxme/lib/jaxmepm.jar:/usr/share/xpp2/lib/PullParser-intf.jar:/usr/share/cglib-2.1/lib/cglib-nodep.jar:/usr/share/iso-relax/lib/isorelax.jar:/usr/share/asm-1.5/lib/asm-analysis.jar:/usr/share/spin/lib/spin.jar:/usr/share/junit/lib/junit.jar:/usr/share/jpf-1.5/lib/jpf-tools.jar:/usr/share/jaxme/lib/jaxme2-rt.jar:/usr/share/msv/lib/msv.jar:/usr/share/xmldb/lib/xmldb-api.jar:/usr/share/saxpath/lib/saxpath.jar:/usr/share/commons-logging/lib/commons-logging-api.jar:/usr/share/asm-1.5/lib/asm-util.jar:/usr/share/asm-1.5/lib/asm-tree.jar:/usr/share/jpf-1.5/lib/jpf-boot.jar:/usr/share/jdom-jaxen-1.0_beta9/lib/jdom-jaxen.jar -Djava.library.path=/lib:/usr/lib net.sf.jabref.JabRef Feb 11, 2010 8:59:38 AM net.sf.jabref.plugin.PluginCore initialize INFO: Found 2 plugin(s): - net.sf.jabref.core (jar:file:/usr/share/jabref/lib/jabref.jar!/plugins/net.sf.jabref.core/plugin.xml) - net.sf.jabref.export.misq (jar:file:/usr/share/jabref/lib/jabref.jar!/plugins/net.sf.jabref.export.misq/plugin.xml) Please note, if I run $ GJL_DEBUG=1 jabref No extra error messages are produced in the terminal, nor in jabref's error console exception tab (under menu help), but the problem still exists. But, if I run jabref directly from the bash commandline using $ java -classpath /usr/share/xsdlib/lib/xsdlib.jar:/usr/share/jaxme/lib/jaxmejs.jar:/usr/share/bcmail/lib/bcmail.jar:/usr/share/xml-commons-resolver/lib/xml-commons-resolver.jar:/usr/share/ant-core/lib/ant.jar:/usr/share/jabref/lib/jabref.jar:/usr/share/asm-1.5/lib/asm-attrs.jar:/usr/share/jdom-1.0/lib/jdom.jar:/usr/share/sun-jaf/lib/activation.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-jdk14.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz.jar:/usr/share/xpp3/lib/xpp3.jar:/usr/share/servletapi-2.4/lib/jsp-api.jar:/usr/share/xalan-serializer/lib/serializer.jar:/usr/share/jgoodies-looks-2.0/lib/looks.jar:/usr/share/cglib-2.1/lib/cglib.jar:/usr/share/ant-core/lib/ant-launcher.jar:/usr/share/jpfcodegen/lib/JPFCodeGenerator-rt.jar:/usr/share/commons-lang-2.1/lib/commons-lang.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-core.jar:/usr/share/jaxme/lib/jaxmexs.jar:/usr/share/commons-logging/lib/commons-logging-adapters.jar:/usr/share/trove/lib/trove.jar:/usr/share/microba/lib/microba.jar:/usr/share/jabref/lib/antlr-3.0b5.jar:/usr/share/dom4j-1/lib/dom4j.jar:/usr/share/sun-javamail/lib/mail.jar:/usr/share/jdom-jaxen-1.0/lib/jdom-jaxen.jar:/usr/share/tomcat-servlet-api-2.3/lib/servlet.jar:/usr/share/xpp2/lib/PullParser-standard.jar:/usr/share/xalan/lib/xalan.jar:/usr/share/fontbox/lib/fontbox.jar:/usr/share/commons-collections/lib/commons-collections.jar:/usr/share/asm-1.5/lib/kasm.jar:/usr/share/relaxng-datatype/lib/relaxngDatatype.jar:/usr/share/bcel/lib/bcel.jar:/usr/share/jempbox/lib/jempbox.jar:/usr/share/asm-1.5/lib/asm.jar:/usr/share/jgraph/lib/jgraph.jar:/usr/share/glazedlists/lib/glazedlists.jar:/usr/share/jgoodies-forms/lib/forms.jar:/usr/share/javacup/lib/javacup.jar:/usr/share/bcprov/lib/bcprov.jar:/usr/share/concurrent-util/lib/concurrent.jar:/usr/share/xmldb/lib/xmldb-api-sdk.jar:/usr/share/jpfcodegen/lib/JPFCodeGenerator.jar:/usr/share/aspectwerkz-2/lib/aspectwerkz-nodeps-jdk14.jar:/usr/share/xerces-2/lib/xercesImpl.jar:/usr/share/xpp2/lib/PullParser-x2.jar:/usr/share/lucene-2.1/lib/lucene-demos.jar:/usr/share/xpp2/lib/PullParser.jar:/usr/share/werken-xpath/lib/werken.xpath.jar:/usr/share/xml-commons-external-1.3/lib/xml-apis.jar:/usr/share/xml-commons-external-1.3/lib/xml-apis-ext.jar:/usr/share/avalon-logkit-2.0/lib/avalon-logkit.jar:/usr/share/jaxme/lib/jaxme2.jar:/usr/share/antlr/lib/antlr.jar:/usr/share/lucene-2.1/lib/lucene-core.jar:/usr/share/glassfish-jms-api/lib/glassfish-jms-api.jar:/usr/share/jrexx/lib/jrexx.jar:/usr/share/servletapi-2.4/lib/servlet-api.jar:/usr/share/ant-core/lib/ant-bootstrap.jar:/usr/share/jakarta-oro-2.0/lib/jakarta-oro.jar:/usr/share/jsr173/lib/jsr173.jar:/usr/share/jpf-1.5/lib/jpf.jar:/usr/share/log4j/lib/log4j.jar:/usr/share/jaxme/lib/jaxmeapi.jar:/usr/share/pdfbox/lib/pdfbox.jar:/usr/share/jdom-1.0_beta9/lib/jdom.jar:/usr/share/qdox-1.6/lib/qdox.jar:/usr/share/commons-logging/lib/commons-logging.jar:/usr/share/asm-1.5/lib/asm-xml.jar:/usr/share/velocity/lib/velocity.jar:/usr/share/jaxme/lib/jaxmepm.jar:/usr/share/xpp2/lib/PullParser-intf.jar:/usr/share/cglib-2.1/lib/cglib-nodep.jar:/usr/share/iso-relax/lib/isorelax.jar:/usr/share/asm-1.5/lib/asm-analysis.jar:/usr/share/spin/lib/spin.jar:/usr/share/junit/lib/junit.jar:/usr/share/jpf-1.5/lib/jpf-tools.jar:/usr/share/jaxme/lib/jaxme2-rt.jar:/usr/share/msv/lib/msv.jar:/usr/share/xmldb/lib/xmldb-api.jar:/usr/share/saxpath/lib/saxpath.jar:/usr/share/commons-logging/lib/commons-logging-api.jar:/usr/share/asm-1.5/lib/asm-util.jar:/usr/share/asm-1.5/lib/asm-tree.jar:/usr/share/jpf-1.5/lib/jpf-boot.jar:/usr/share/jdom-jaxen-1.0_beta9/lib/jdom-jaxen.jar -Djava.library.path=/lib:/usr/lib net.sf.jabref.JabRef the problem does not occur and acroread, firefox,... are started properly. Any ideas? Meh, found the nasty reason, changing summary. The problem is that the gjl launcher will export variables listed in ENV_VARS in package.env of requested packages and its dependencies. If a java-virtual provided by VM is in the dependencies, VM's envfile will be also processed and since if typically includes something like: ENV_VARS="JAVA_HOME JDK_HOME JAVAC PATH ROOTPATH LDPATH MANPATH" (for a different reason than ENV_VARS in non-VM package.env), PATH will be redefined to something like: export JAVA_HOME="/opt/sun-jdk-1.6.0.18"; export JDK_HOME="/opt/sun-jdk-1.6.0.18"; export JAVAC="/opt/sun-jdk-1.6.0.18/bin/javac"; export ROOTPATH="/opt/sun-jdk-1.6.0.18/bin:/opt/sun-jdk-1.6.0.18/jre/bin"; export MANPATH="/opt/sun-jdk-1.6.0.18/man"; export PATH="/opt/sun-jdk-1.6.0.18/bin:/opt/sun-jdk-1.6.0.18/jre/bin"; export LDPATH="/opt/sun-jdk-1.6.0.18/jre/lib/amd64/:/opt/sun-jdk-1.6.0.18/jre/lib/amd64/native_threads/:/opt/sun-jdk-1.6.0.18/jre/lib/amd64/xawt/:/opt/sun-jdk-1.6.0.18/jre/lib/amd64/server/"; which doesn't include /usr/bin Committed revision 8116. Released in 2.1.11 |