Bug 297199 – sci-visualization/gwyddion fails to build

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Diego Elio Pettenò (RETIRED) 2009-12-16 17:58:34 UTC]

Portage 2.1.7.14 (default/linux/x86/10.0, gcc-4.4.2-asneeded, glibc-2.11-r1, 2.6.32 i686)
=================================================================
System uname: Linux-2.6.32-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.1
Timestamp of tree: Tue, 15 Dec 2009 03:00:01 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 2.4 [enabled]
app-shells/bash:     4.0_p35
dev-java/java-config: 1.3.7-r1, 2.1.10
dev-lang/python:     2.6.4, 3.1.1-r1
dev-python/pycrypto: 2.1.0_beta1
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.8.0
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.5.3
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.4_p6-r1, 1.5, 1.6.3, 1.7.9-r2, 1.8.5-r3, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /opt/openjms/config /usr/lib/ccs/conf /usr/share/X11/xkb /usr/share/bufrtables /usr/share/config /usr/share/qpsmtpd/plugins /var/bind /var/lib/hsqldb /var/phxd /var/spool/torque /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
FEATURES="assume-digests ccache distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms split-log strict test test-fail-continue unmerge-orphans userfetch userpriv usersandbox"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo"
INSTALL_MASK="  /usr/share/doc  /usr/share/info"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j14"
PKGDIR="/var/spool/portage/packages"
PORTAGE_COMPRESS=""
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/var/cache/portage/tree-tinderbox"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 java5 java6 modules mudflap ncurses nls nostatic nptl nptlonly openmp pam pcre perl pppd python qt3support readline reflection ruby session spl ssl sysfs tcpd unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias auth_digest" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, LC_ALL, LINGUAS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

[Comment 1 Diego Elio Pettenò (RETIRED) 2009-12-16 17:58:59 UTC]

Created attachment 213220 [details]
Build log

[Comment 2 Markus Dittrich (RETIRED) 2009-12-18 03:06:52 UTC]

I don't seem to be able to reproduce this on my box.
It almost looks like a parallel make problem but I
can do -j10 just fine. Could you perhaps test with
-j1 just to make sure.

Thanks,
Markus

[Comment 3 Diego Elio Pettenò (RETIRED) 2009-12-18 09:08:01 UTC]

I'd look into the flags, maybe some --without switch is not properly wired up.

[Comment 4 Marcus D. Hanwell (RETIRED) 2010-05-16 20:28:06 UTC]

Couldn't reproduce either, seems odd having a "NONE" that it tries to cd to. I will see if I can find some time to dig into this and try to reproduce, but have never seen a failure like this.

[Comment 5 Kacper Kowalik (Xarthisius) (RETIRED) 2010-05-17 10:51:28 UTC]

(In reply to comment #4)
> Couldn't reproduce either, seems odd having a "NONE" that it tries to cd to. I
> will see if I can find some time to dig into this and try to reproduce, but
> have never seen a failure like this.
This particular error is caused by L332-333 in configure.ac:

test "x$x_includes" = "x" || CPPFLAGS="$CPPFLAGS -I$x_includes"
test "x$x_libraries" = "x" || LDFLAGS="$LDFLAGS -L$x_libraries"

changing "x" => "xNONE" or suppling --x-includes/--x-libraries to configure will do the trick.

But what's more important gwyddion has several automagic deps, e.g. X libs, GTK+, pangocairo, ...

Best regards,
Kacper Kowalik

[Comment 6 Sébastien Fabbro (RETIRED) 2010-12-02 19:12:40 UTC]

fixed in 2.21 and  automagic seems gone from upstream changes to pkg-config.