Bug 289043 – /usr/share/info.ecompress.dir: many packages on one file

• Product: Gentoo Linux
• Status: RESOLVED INVALID

[Description Rustam Gubaydullin 2009-10-14 13:21:55 UTC]

* sys-apps/util-linux-2.14.2
 * sys-apps/which-2.20
 * sys-devel/bison-2.3
 * sys-apps/sed-4.2
 * sys-apps/grep-2.5.4-r1
 * media-libs/aalib-1.4_rc5
 * sys-apps/findutils-4.4.0

Reproducible: Always

Steps to Reproduce:
1. emerge one of listed packages
Actual Results:  
>>> Failed to install sys-apps/util-linux-2.14.2, Log file:

>>>  '/var/tmp/portage/sys-apps/util-linux-2.14.2/temp/build.log'

 * Messages for package sys-apps/util-linux-2.14.2:

 * This package will overwrite one or more files that may belong to other
 * packages (see list below). You can use a command such as `portageq
 * owners / <filename>` to identify the installed package that owns a
 * file. If portageq reports that only one package owns a file then do
 * NOT file a bug report. A bug report is only useful if it identifies at
 * least two or more packages that are known to install the same file(s).
 * If a collision occurs and you can not explain where the file came from
 * then you should simply ignore the collision since there is not enough
 * information to determine if a real problem exists. Please do NOT file
 * a bug report at http://bugs.gentoo.org unless you report exactly which
 * two packages install the same file(s). Once again, please do NOT file
 * a bug report unless you have completely understood the above message.
 * 
 * Detected file collision(s):
 * 
 * 	/usr/share/info.ecompress.dir
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sys-apps/which-2.20
 * 	/usr/share/info.ecompress.dir
 * 
 * sys-devel/bison-2.3
 * 	/usr/share/info.ecompress.dir
 * 
 * sys-apps/sed-4.2
 * 	/usr/share/info.ecompress.dir
 * 
 * sys-apps/grep-2.5.4-r1
 * 	/usr/share/info.ecompress.dir
 * 
 * media-libs/aalib-1.4_rc5
 * 	/usr/share/info.ecompress.dir
 * 
 * sys-apps/findutils-4.4.0
 * 	/usr/share/info.ecompress.dir
 * 
 * Package 'sys-apps/util-linux-2.14.2' NOT merged due to file
 * collisions. If necessary, refer to your elog messages for the whole
 * content of the above message.

Expected Results:  
Installed util-linux

Portage 2.1.6.13 (default/linux/amd64/10.0, gcc-4.3.2, glibc-2.9_p20081201-r2, 2.6.30-gentoo-r5 x86_64)
=================================================================
System uname: Linux-2.6.30-gentoo-r5-x86_64-Intel-R-_Pentium-R-_Dual_CPU_T2370_@_1.73GHz-with-gentoo-1.12.11.1
Timestamp of tree: Wed, 14 Oct 2009 08:30:02 +0000
app-shells/bash:     4.0_p28
dev-java/java-config: 2.1.8-r1
dev-lang/python:     2.6.2-r1
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6a
virtual/os-headers:  2.6.27-r2
ACCEPT_KEYWORDS="amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1"
LINGUAS="en ru"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X aalib acl acpi alsa amd64 apm atm bcmath berkdb bluetooth bzip2 calendar cdb cgi cleartype cli consolekit cracklib cryct crypt ctype cups curl curlwrappers dbus dga dhcp directfb djvu dri elisp exif fam ffmpeg fortran ftp gd gdbm gif gmp gnutls gpm gstreamer gtk iconv idn imap imlib ipv6 isdnlog java jpeg jpeg2k lapack laptop latex libcaca libnotify libssh2 mbox mhash mmx modules mp3 mudflap multilib nas ncurses network networking nis nls nptl nptlonly nsplugin odbc ogg openal opengl openmp pam pcntl pcre perl png posix ppds pppd pulseaudio python qt3support qt4 readline recode reflection samba sasl sdl session sharedext sharedmem simplexml slp smp snmp sockets spell spl sse sse2 ssl startup-notification suid svg symlink sysfs syslog tcl tcpd test test-programs threads thunar tidy tiff tk tokenizer truetype unicode usb v4l v4l2 wddx xattr xcomposite xml xmlreader xmlrpc xmlwriter xorg xrandr xv zip zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="synaptics mouse keyboard evdev joystick wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en ru" USERLAND="GNU" VIDEO_CARDS="radeon"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

[Comment 1 Rafał Mużyło 2009-10-14 14:06:14 UTC]

*** This bug has been marked as a duplicate of bug 285983 ***

[Comment 2 Rustam Gubaydullin 2009-10-14 14:11:48 UTC]

From bug 285983
"It's existence was caused by a bug in findutils after glibc upgrade.
If you already have working findutils (no xargs warnings during emerge),
remove that file and reemerge all packages that claim to own it
to clean up that mess."

krypt ~ # grep xargs /var/tmp/portage/sys-apps/util-linux-2.14.2/temp/build.log
/usr/lib64/portage/bin/ebuild.sh: line 450: xargs: command not found
/usr/lib64/portage/bin/ebuild-helpers/ecompressdir: line 31: xargs: command not found
/usr/lib64/portage/bin/ebuild-helpers/ecompressdir: line 32: xargs: command not found
/usr/lib64/portage/bin/ebuild-helpers/ecompress: line 58: xargs: command not found
/usr/lib64/portage/bin/ebuild-helpers/ecompress: line 59: xargs: command not found
/usr/lib64/portage/bin/misc-functions.sh: line 81: xargs: command not found

[Comment 3 Rustam Gubaydullin 2009-10-14 14:20:48 UTC]

Created attachment 207091 [details]
build.log

This is "build.log"

[Comment 4 Rustam Gubaydullin 2009-10-14 14:21:25 UTC]

Re-emerging glibc and findutils now

[Comment 5 Rustam Gubaydullin 2009-10-14 15:04:26 UTC]

...

>>> Failed to install sys-libs/glibc-2.9_p20081201-r2, Log file:

>>>  '/var/tmp/portage/sys-libs/glibc-2.9_p20081201-r2/temp/build.log'

 * Messages for package sys-libs/glibc-2.9_p20081201-r2:

 *   No config.sub found in /var/tmp/portage/sys-libs/glibc-2.9_p20081201-r2/work/glibc-2.9-20081201, skipping ...
 *   No config.guess found in /var/tmp/portage/sys-libs/glibc-2.9_p20081201-r2/work/glibc-2.9-20081201, skipping ...
 * 
 * Detected file collision(s):
 * 
 * 	/usr/share/info.ecompress.dir
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * media-libs/aalib-1.4_rc5
 * 	/usr/share/info.ecompress.dir
 ***
 * sys-apps/findutils-4.4.0
 * 	/usr/share/info.ecompress.dir
 * 
 * Package 'sys-libs/glibc-2.9_p20081201-r2' NOT merged due to file
 * collisions. If necessary, refer to your elog messages for the whole
 * content of the above message.

[Comment 6 Rustam Gubaydullin 2009-10-14 15:16:53 UTC]

emerge findutils
solved the problems