Bug 268249 – sci-biology/rebase-904 fails to compile because of missing REBASE.DOC

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Juergen Rose 2009-05-02 08:32:55 UTC]

'emerge rebase' fails with:
...
>>> Compiling source in /var/tmp/portage/sci-biology/rebase-904/work/rebase-904 ...

 * Indexing Rebase for usage with EMBOSS.

>>> Source compiled.
>>> Test phase [not enabled]: sci-biology/rebase-904

>>> Install rebase-904 into /var/tmp/portage/sci-biology/rebase-904/image/ category sci-biology
!!! newdoc: REBASE.DOC does not exist
 * 
 * ERROR: sci-biology/rebase-904 failed.


Reproducible: Always




root@tarantel:/root(34)# emerge --info
Portage 2.1.6.11 (hardened/linux/x86, gcc-4.3.3, glibc-2.9_p20081201-r2, 2.6.29-rc3 i686)
=================================================================
System uname: Linux-2.6.29-rc3-i686-AMD_Athlon-tm-_Processor-with-gentoo-2.0.0
Timestamp of tree: Fri, 01 May 2009 23:00:13 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
ccache version 2.4 [disabled]
app-shells/bash:     4.0_p17-r1
dev-java/java-config: 1.3.7-r1, 2.1.7
dev-lang/python:     2.4.4-r15, 2.5.4-r2, 2.6.2
dev-python/pycrypto: 2.0.1-r8
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.6.3-r1
sys-apps/baselayout: 2.0.0
sys-apps/openrc:     0.4.3-r2
sys-apps/sandbox:    1.9
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.19.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6a
virtual/os-headers:  2.6.28-r1
ACCEPT_KEYWORDS="x86 ~x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=athlon -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -march=athlon -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
FFLAGS="-O2 -march=athlon -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo rsync://gd.tuwien.ac.at/opsys/linux/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu http://212.219.247.17/sites/www.ibiblio.org/gentoo/ ftp://ftp6.uni-erlangen.de/pub/mirrors/gentoo http://ftp6.uni-erlangen.de/pub/mirrors/gentoo ftp://vlaai.snt.ipv6.utwente.nl/pub/os/linux/gentoo/ http://www.gigaload.org/gentoo.org/"
LDFLAGS="-Wl,-O1"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/zugaina /usr/local/portage/layman/java-overlay /usr/local/portage/layman/science /usr/local/portage/layman/dotnet /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-completion beagle berkdb bjam blas bluetooth bonobo boo boost bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib cran crypt curl cxx daap dbus device-mapper dga dia divx djvu dlloader dmi doc dri ds3490 dv dvb dvd dvdr dvi dxr3 dynagraph eds effects elf emacs emboss encode epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fpx galago gd gdal geos gif gimp gimpprint ginac glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened harness hddtemp hdf hdf5 hlapi http iconv icq icu id3 ide imagemagick imap innodb ipod irda irmc isdnlog ithreads jabber java java5 java6 jbig john jpeg jpeg2k kde4 kerberos kexi keyring ladspa lame lapack latex lcms ldap libffi libgda libsamplerate lirc lm_sensors lua lzo lzw mad maildir mailwrapper math matroska midi mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4live mpeg mpeg2 mplayer mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networkmanager nfs nntp nptl nptlonly nsplugin ntfs numarray numeric obex ocaml octave odbc ogdi ogg ole opengl pam pcre pda pdf perl pic plotutils plugins png policykit posix postgres postscript pppd preview-latex proj projectx pstricks python qemu qhull quicktime readline reflection reiserfs rhythmbox rle rpc rrdcgi rrdtool samba sasl science sdl session slang slp sndfile snmp soup sox speex spell spl sqlite ssl stlport subtitles subversion suexec svg sysfs t1lib tcl tcpd tex theora threads thunderbird tidy tiff tk truetype unicode urandom userlocales utempter v4l2 vorbis webkit win32codecs wmf wxwindows x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse                " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="ide websvccommon nb harness apisupport groovy gsf j2ee java xml" USERLAND="GNU" VIDEO_CARDS="ati vesa"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Patrick Lauer 2009-05-02 09:01:11 UTC]

-905 is in the tree and seems to fix this issue.