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Bug 259849

Summary: new package request sci-biology/consed2gap: a pipeline to convert from consed to gap formatted genome assemblies
Product: Gentoo Linux Reporter: Martin Mokrejš <mmokrejs>
Component: New packagesAssignee: Default Assignee for New Packages <maintainer-wanted>
Status: RESOLVED OBSOLETE    
Severity: enhancement CC: sci-biology
Priority: High    
Version: unspecified   
Hardware: All   
OS: Linux   
URL: http://genome.imb-jena.de/software/consed2gap/
Whiteboard:
Package list:
Runtime testing required: ---

Comment 1 Andreas K. Hüttel archtester gentoo-dev 2010-10-30 11:54:29 UTC
No comments have been made on this bug report for some time.
Is anyone still interested in integration of this package? 

If yes, please indicate that here in this bug report.

Otherwise we'll resolve the bug in the near future, since sci(-*) has
an extremely large number of pending package requests and we would like
to focus...

Comment 2 Andreas K. Hüttel archtester gentoo-dev 2010-12-16 16:04:15 UTC
No response for six weeks. Resolving...
Comment 3 Martin Mokrejš 2011-01-08 13:19:39 UTC
This partly overlaps with upcoming packages in science overlay:

caftools
align_to_scf

This package has some perl modules but on the original webpage it claims it has a special align_to_scf version. There are also some libs.

Will ask upstream for details will put it into overlay.