Bug 259847

Summary:	new package sci-biology/caf2gap: convert consed file format to gap4 file format
Product:	Gentoo Linux	Reporter:	Martin Mokrejš <mmokrejs>
Component:	New packages	Assignee:	Default Assignee for New Packages <maintainer-wanted>
Status:	RESOLVED DUPLICATE
Severity:	enhancement	CC:	sci-biology
Priority:	High
Version:	unspecified
Hardware:	All
OS:	Linux
URL:	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/caf2gap.tar.gz
Whiteboard:
Package list:		Runtime testing required:	---

Description Martin Mokrejš 2009-02-21 20:34:36 UTC

http://envgen.nox.ac.uk/envgen/software/archives/000581.html
http://sarton.imb-jena.de/software/consed2gap/
ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/caf2gap/gap2caf.doc

Comment 1 Martin Mokrejš 2009-02-21 20:55:41 UTC

Description of CAF file format is here: http://www.sanger.ac.uk/Software/formats/CAF/

Comment 2 Andreas K. Hüttel archtester

2010-10-30 11:54:04 UTC

No comments have been made on this bug report for some time.
Is anyone still interested in integration of this package? 

If yes, please indicate that here in this bug report.

Otherwise we'll resolve the bug in the near future, since sci(-*) has
an extremely large number of pending package requests and we would like
to focus...

Comment 3 Martin Mokrejš 2010-12-05 21:31:47 UTC

Seems ca2gap is encompassed in caftools (bug #259842). The URL above points to files from 1998 while caftools is much newer (2007).

*** This bug has been marked as a duplicate of bug 259842 ***